WormBase Tree Display for Gene: WBGene00004704

WBGene00004704 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 1
    Name: CGC_name: rsp-7 Person_evidence: WBPerson297
      Sequence_name: D2089.1
      Molecular_name: D2089.1a
        D2089.1a.1
        CE03111
        D2089.1b
        CE30507
        D2089.1b.1
        D2089.1b.2
      Other_name: CELE_D2089.1 Accession_evidence: NDB BX284602
      Public_name: rsp-7
    DB_info: Database: AceView gene 2K951
        WormQTL gene WBGene00004704
        WormFlux gene WBGene00004704
        NDB locus_tag CELE_D2089.1
        Panther gene CAEEL|WormBase=WBGene00004704|UniProtKB=O01159
          family PTHR32343
        NCBI gene 174646
        RefSeq protein NM_001383939.2
            NM_001393181.1
        SwissProt UniProtAcc O01159
        TREEFAM TREEFAM_ID TF106266
        UniProt_GCRP UniProtAcc O01159
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rsp
    Allele (46)
    Strain: WBStrain00036756
    RNASeq_FPKM (74)
    GO_annotation: 00024426
      00024427
      00024428
      00024429
      00024430
      00024431
      00024432
      00024433
      00113088
      00113089
    Ortholog: WBGene00053430 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025981 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00163869 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00128181 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
      WBGene00097770 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      CSP21.g9093 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1663 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12292 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9167 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP40.g17321 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cnig_chr_II.g5722 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8883 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03642.g30837 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21938 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14504 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5702 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20289710 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5787 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00259188 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0024285 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-605 Danio rerio From_analysis: Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-040801-132 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:10782 Homo sapiens From_analysis: OMA
            OrthoFinder
            Panther
      HGNC:17882 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1916457 Mus musculus From_analysis: OMA
            OrthoFinder
            Panther
      MGI:2145245 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621696 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1559953 Rattus norvegicus From_analysis: OMA
            OrthoFinder
            Panther
    Structured_description (2)
  Disease_info: Potential_model: DOID:0050908 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10782)
      DOID:0060041 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10782)
  Molecular_info: Corresponding_CDS: D2089.1a
      D2089.1b
    Corresponding_CDS_history: D2089.1:wp77
    Corresponding_transcript: D2089.1a.1
      D2089.1b.1
      D2089.1b.2
    Other_sequence (51)
    Associated_feature: WBsf047599
      WBsf658153
      WBsf658154
      WBsf222047
  Experimental_info: RNAi_result (18)
    Expr_pattern: Expr1015913
      Expr1032324
      Expr1147502
      Expr2015564
      Expr2033799
    Drives_construct: WBCnstr00035430
    Construct_product: WBCnstr00035430
    Microarray_results (36)
    Expression_cluster (123)
    Interaction (21)
  Map_info: Map: II Position: 3.12321
    Positive: Positive_clone: D2089 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003988
    WBPaper00026593
    WBPaper00030511
    WBPaper00035228
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (3.12304)
  Method: Gene