WormBase Tree Display for Gene: WBGene00004465

WBGene00004465 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: T06D8
  Identity: Version: 1
    Name: CGC_name: rpn-9 Person_evidence: WBPerson1551
      Sequence_name: T06D8.8
      Molecular_name: T06D8.8
        T06D8.8.1
        CE02329
      Other_name: CELE_T06D8.8 Accession_evidence: NDB BX284602
      Public_name: rpn-9
    DB_info: Database: AceView gene 2L528
        WormQTL gene WBGene00004465
        WormFlux gene WBGene00004465
        NDB locus_tag CELE_T06D8.8
        Panther gene CAEEL|WormBase=WBGene00004465|UniProtKB=Q22253
          family PTHR10539
        NCBI gene 174715
        RefSeq protein NM_064004.8
        TREEFAM TREEFAM_ID TF105612
        TrEMBL UniProtAcc Q22253
        UniProt_GCRP UniProtAcc Q22253
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpn
    Allele (16)
    Strain: WBStrain00036223
      WBStrain00054676
      WBStrain00054679
    Component_of_genotype: WBGenotype00000100
    RNASeq_FPKM (74)
    GO_annotation: 00074684
      00074685
      00074686
      00074687
      00074688
      00074689
      00074690
      00074691
      00074692
      00074693
    Contained_in_operon: CEOP2524
    Ortholog: WBGene00053529 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025900 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00163314 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00112274 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00123650 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00234258 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6431 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6037 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21843 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17522 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22017 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16637 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13732 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3020 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7138 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17753 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_22628.g26890 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rpn-9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold45.g271 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00116.g4757 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18790 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005384 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02625 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g22078 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20333800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5903 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248154 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261125 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00294318 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002835 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0028691 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1004 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9558 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1345192 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1305236 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: rpn-9 is predicted to encode a non-ATPase subunit of the 19S regulatory complex of the proteasome that that affects body morphology, embryonic viability, locomotion, larval viability, fertility, and growth; interacts with RPN-11 in yeast two-hybrid assays. Paper_evidence (4)
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable structural molecule activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome regulatory particle, lid subcomplex. Is an ortholog of human PSMD13 (proteasome 26S subunit, non-ATPase 13). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Modifies_disease: DOID:332
    DOID:9255
  Modifies_disease_in_annotation: WBDOannot00001141
    WBDOannot00001142
  Molecular_info: Corresponding_CDS: T06D8.8
    Corresponding_transcript: T06D8.8.1
    Other_sequence (81)
    Associated_feature: WBsf650554
      WBsf650555
      WBsf650556
      WBsf981282
      WBsf223910
      WBsf223911
  Experimental_info: RNAi_result (26)
    Expr_pattern: Chronogram435
      Expr6621
      Expr1027703
      Expr1032268
      Expr1156253
      Expr2015497
      Expr2033732
    Drives_construct: WBCnstr00003961
      WBCnstr00035464
    Construct_product: WBCnstr00035464
    Microarray_results (22)
    Expression_cluster (163)
    Interaction (193)
  Map_info: Map: II Position: 3.37747 Error: 0.005347
    Positive: Positive_clone: T06D8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5187
    Pseudo_map_position
  Reference (15)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene