WormBase Tree Display for Gene: WBGene00004463

WBGene00004463 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F49C12
  Identity (6)
  Gene_info: Biotype: SO:0001217
    Gene_class: rpn
    Allele (24)
    Strain: WBStrain00002821
      WBStrain00003270
    RNASeq_FPKM (74)
    GO_annotation: 00068460
      00068461
      00068462
      00068463
    Contained_in_operon: CEOP4680
    Ortholog: WBGene00040409 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00161665 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00151004 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00078908 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00078909 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00132590 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00101294 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00234014 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8756 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3946 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16946 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19273 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7928 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22484 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g2757 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13920 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19376 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g20395 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22192 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00213.g7156 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_21381.g26653 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rpn-7 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20196 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01060.g18051 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09996 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_013398 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09132 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5103 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40347700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11281 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245515 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00259171 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291832 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000006312 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0028688 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1038 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9564 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1913663 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:735127 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00000813 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: rpn-7 is predicted to encode a non-ATPase subunit of the 19S regulatory complex of the proteasome that affects fertility and embryonic viability. Paper_evidence: WBPaper00004651
            WBPaper00004888
            WBPaper00005599
            WBPaper00005654
            WBPaper00006395
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Expressed in tail. Is an ortholog of human PSMD6 (proteasome 26S subunit, non-ATPase 6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F49C12.8
    Corresponding_transcript: F49C12.8.1
      F49C12.8.2
    Other_sequence (109)
    Associated_feature: WBsf655039
      WBsf660503
      WBsf228808
      WBsf228809
  Experimental_info: RNAi_result (40)
    Expr_pattern: Chronogram114
      Chronogram1724
      Expr6121
      Expr6122
      Expr12710
      Expr1014849
      Expr1032266
      Expr1151643
      Expr2015495
      Expr2033730
    Drives_construct: WBCnstr00003348
      WBCnstr00004585
      WBCnstr00035466
    Construct_product: WBCnstr00035466
    Microarray_results (21)
    Expression_cluster (171)
    Interaction (200)
  Map_info: Map: IV Position: 4.16054 Error: 0.004059
    Positive: Positive_clone: F49C12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (18)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene