WormBase Tree Display for Gene: WBGene00004460

WBGene00004460 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C30C11
  Identity: Version: 1
    Name: CGC_name: rpn-3 Person_evidence: WBPerson1551
      Sequence_name: C30C11.2
      Molecular_name: C30C11.2
        C30C11.2.1
        CE00101
      Other_name: CELE_C30C11.2 Accession_evidence: NDB BX284603
      Public_name: rpn-3
    DB_info: Database: AceView gene 3J537
        WormQTL gene WBGene00004460
        WormFlux gene WBGene00004460
        NDB locus_tag CELE_C30C11.2
        Panther gene CAEEL|WormBase=WBGene00004460|UniProtKB=Q04908
          family PTHR10758
        NCBI gene 176196
        RefSeq protein NM_066468.5
        SwissProt UniProtAcc Q04908
        TREEFAM TREEFAM_ID TF106110
        UniProt_GCRP UniProtAcc Q04908
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpn
    Allele (21)
    Strain: WBStrain00001197
      WBStrain00047450
    RNASeq_FPKM (74)
    GO_annotation: 00052645
      00052646
      00052647
      00052648
      00052649
      00052650
      00112935
      00112936
      00112937
    Contained_in_operon: CEOP3528
    Ortholog: WBGene00062959 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00037606 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142670 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00131590 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222744 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4700 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g746 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6394 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12902 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10520 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g17596 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8672 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11886 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9150 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g20710 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00784.g14121 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rpn-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold571.g4266 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00349.g9889 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_15079 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010151 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14817 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g1495 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30079900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8408 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245772 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00281597 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00259291 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285392 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000823 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0261396 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1444 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:9560 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:98858 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1311470 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog (2)
    Structured_description: Automated_description: Predicted to enable enzyme regulator activity. Involved in programmed cell death involved in cell development. Predicted to be part of proteasome regulatory particle, lid subcomplex. Expressed in head; intestine; and tail. Is an ortholog of human PSMD3 (proteasome 26S subunit, non-ATPase 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C30C11.2
    Corresponding_transcript: C30C11.2.1
    Other_sequence (100)
    Associated_feature: WBsf645418
      WBsf645419
      WBsf659288
      WBsf225418
      WBsf225419
      WBsf225420
      WBsf225421
  Experimental_info: RNAi_result (22)
    Expr_pattern: Chronogram1395
      Chronogram1679
      Expr5382
      Expr1013089
      Expr1032263
      Expr1145554
      Expr2015491
      Expr2033726
    Drives_construct: WBCnstr00002090
      WBCnstr00035468
    Construct_product: WBCnstr00035468
    Microarray_results (20)
    Expression_cluster (163)
    Interaction (162)
  Map_info: Map: III Position: -0.259374 Error: 0.000552
    Positive: Positive_clone: C30C11 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (14)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene