WormBase Tree Display for Gene: WBGene00004456

WBGene00004456 SMap: S_parent: Sequence: Y48B6A
  Identity (6)
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele: WBVar01499702
      WBVar00787168
      WBVar00787169
      WBVar00787170
      WBVar01498435
      WBVar00384531
      WBVar02125760
      WBVar01721525
      WBVar01498941
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl43 using blastP
    Strain: WBStrain00008594
    RNASeq_FPKM (74)
    GO_annotation: 00098976
      00098977
      00098978
      00098979
      00098980
      00112925
      00112926
      00112927
    Contained_in_operon: CEOP2697
    Ortholog: WBGene00039806 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142608 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00084800 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00128607 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00233981 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g15900 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11219 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14702 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9774 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27159 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3662 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21435 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g16984 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g3034 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5714 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_01035.g15448 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_24366.g27156 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rpl-43 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold581.g4560 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_09821 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006643 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04084 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13451 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20632 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20056800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g6493 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243484 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304365 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263010 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285394 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003855 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      SGD:S000006247 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      FB:FBgn0261608 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-070928-31 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:10348 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:35645 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      MGI:98068 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1564849 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      RGD:1561181 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1583665 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      RGD:2319947 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: rpl-43 encodes a large ribosomal subunit L37a protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable metal ion binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL37A (ribosomal protein L37a). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y48B6A.2
    Corresponding_transcript: Y48B6A.2.1
    Other_sequence (302)
    Associated_feature: WBsf644831
      WBsf654850
      WBsf658390
      WBsf222425
      WBsf222426
      WBsf222427
  Experimental_info: RNAi_result: WBRNAi00056880 Inferred_automatically: RNAi_primary
      WBRNAi00009353 Inferred_automatically: RNAi_primary
      WBRNAi00026752 Inferred_automatically: RNAi_primary
      WBRNAi00033396 Inferred_automatically: RNAi_primary
      WBRNAi00111880 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017921
      Expr1032259
      Expr1160332
      Expr2015477
      Expr2033712
    Microarray_results (25)
    Expression_cluster (145)
    Interaction (174)
  Map_info: Map: II Position: 22.4552 Error: 0.003479
    Positive: Positive_clone: Y48B6A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025088
    WBPaper00028564
    WBPaper00038491
    WBPaper00045184
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene