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WormBase Tree Display for Gene: WBGene00004340

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Name Class

WBGene00004340EvidenceCGC_data_submission
SMapS_parentSequenceF31E3
IdentityVersion1
Name (5)
DB_infoDatabaseAceViewgene3I63
WormQTLgeneWBGene00004340
WormFluxgeneWBGene00004340
NDBlocus_tagCELE_F31E3.3
PanthergeneCAEEL|WormBase=WBGene00004340|UniProtKB=P53016
familyPTHR11669
NCBIgene175976
RefSeqproteinNM_066120.8
SwissProtUniProtAccP53016
TREEFAMTREEFAM_IDTF314424
UniProt_GCRPUniProtAccP53016
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrfc
Allele (15)
StrainWBStrain00051259
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00061627Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00036412Caenorhabditis briggsaeFrom_analysisHillier-set
Inparanoid_8
WormBase-Compara
WBGene00042646Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00153457Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00132378Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00234059Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4683Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4046Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21918Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20614Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g307Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25577Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g5938Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16798Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19868Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3002Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00959.g15125Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-rfc-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14421Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00301.g8994Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_18888Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009941Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04174Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21203Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30252300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8044Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238704Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258216Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285610Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003829Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
FB:FBgn0030871Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040824-3Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
Panther
PhylomeDB
SonicParanoid
HGNC:9972Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2146571Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1310142Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00004338Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004339Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018409Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and ATP hydrolysis activity. Predicted to contribute to DNA clamp loader activity. Involved in DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Is an ortholog of human RFC4 (replication factor C subunit 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF31E3.3
Corresponding_transcriptF31E3.3.1
Other_sequence (15)
Associated_featureWBsf645307
WBsf225184
WBsf225185
Experimental_infoRNAi_resultWBRNAi00082612Inferred_automaticallyRNAi_primary
WBRNAi00046020Inferred_automaticallyRNAi_primary
WBRNAi00002743Inferred_automaticallyRNAi_primary
WBRNAi00002514Inferred_automaticallyRNAi_primary
WBRNAi00007834Inferred_automaticallyRNAi_primary
WBRNAi00082392Inferred_automaticallyRNAi_primary
WBRNAi00008733Inferred_automaticallyRNAi_primary
WBRNAi00046019Inferred_automaticallyRNAi_primary
Expr_patternExpr1017784
Expr1032158
Expr1149917
Expr2015306
Expr2033540
Drives_constructWBCnstr00035555
Construct_productWBCnstr00035555
Microarray_results (19)
Expression_cluster (140)
Interaction (311)
Map_infoMapIIIPosition-0.862057Error0.003826
PositivePositive_cloneF31E3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00005880
WBPaper00026952
WBPaper00038491
WBPaper00055090
RemarkSequence connection from [Boulton S, Vidal M]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene