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WormBase Tree Display for Gene: WBGene00004267

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Name Class

WBGene00004267SMapS_parentSequenceC18A3
IdentityVersion1
NameCGC_namerab-3Person_evidenceWBPerson451
Sequence_nameC18A3.6
Molecular_nameC18A3.6a
C18A3.6a.1
CE23555
C18A3.6b
CE20518
C18A3.6b.1
Other_nameRAB3/A
rbl-3
rab3Accession_evidenceEMBLAB112928
CELE_C18A3.6Accession_evidenceNDBBX284602
Public_namerab-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrab
Allele (101)
Legacy_information[C.elegansII] y250 : mild Unc, Che, Egl defects; Ric.OA1: y251 (similar; both y250 and y251 are missense alleles). Encodes homolog of mammalian rab3 (73% identity to human Rab3a). Dominant negative transgene leads to Ric, some Unc, or L1 lethality like cha-1(0). [NM]
Strain (11)
RNASeq_FPKM (74)
GO_annotation (37)
OrthologWBGene00057294Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00025534Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00157945Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00136916Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00192821Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00207625Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00222549Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6638Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6840Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5496Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g22106Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12252Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g4339Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13873Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g3737Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1631Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7064Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00173.g6195Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-rab-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19397Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00079.g3583Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04399Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006107Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02357Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g17312Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20115110Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4595Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247136Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00114709Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00266307Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00302452Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0005586Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040718-263Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040718-428Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
ZFIN:ZDB-GENE-040801-2Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041210-268Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050208-660Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-080722-14Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9777Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9778Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:9779Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:30269Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:97843Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:97844Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1914545Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1917158Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:3528Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:620922Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:620924Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:620923Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Paralog (32)
Structured_description (2)
Disease_infoExperimental_modelDOID:1574Homo sapiensPaper_evidenceWBPaper00031669
Curator_confirmedWBPerson324
Date_last_updated13 Jun 2019 00:00:00
DOID:1826Homo sapiensPaper_evidenceWBPaper00035198
Curator_confirmedWBPerson38202
Date_last_updated04 Jun 2018 00:00:00
Models_disease_assertedWBDOannot00000559
WBDOannot00000713
Molecular_infoCorresponding_CDSC18A3.6a
C18A3.6b
Corresponding_transcriptC18A3.6a.1
C18A3.6b.1
Other_sequence (26)
Associated_feature (13)
Experimental_infoRNAi_result (17)
Expr_pattern (15)
Drives_construct (108)
Construct_product (92)
AntibodyWBAntibody00000151
WBAntibody00000729
WBAntibody00001350
WBAntibody00001587
Microarray_results (28)
Expression_cluster (233)
Interaction (66)
Map_infoMapIIPosition-0.958332Error0.001327
Well_ordered
PositivePositive_cloneC02C12Author_evidenceNonet MI
C18A3Inferred_automaticallyFrom sequence, transcript, pseudogene data
F11G1Author_evidenceNonet MI
Mapping_dataMulti_point3342
3346
Reference (180)
MethodGene