WormBase Tree Display for Gene: WBGene00004201

WBGene00004201 SMap: S_parent: Sequence: F54F2
  Identity: Version: 1
    Name: CGC_name: prx-19
      Sequence_name: F54F2.8
      Molecular_name: F54F2.8
        F54F2.8.1
        CE00201
      Other_name: CELE_F54F2.8 Accession_evidence: NDB BX284603
      Public_name: prx-19
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: prx
    Allele (44)
    Strain: WBStrain00049364
    RNASeq_FPKM (74)
    GO_annotation: 00042433
      00042434
      00042435
      00042436
      00042437
      00042438
      00042439
      00042440
      00042441
      00112480
    Contained_in_operon: CEOP3877
    Ortholog: WBGene00055187 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00029085 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00157102 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00109469 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00123528 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224642 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5952 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g8915 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7825 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g10368 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15409 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2929 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1179 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4917 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9249 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6796 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-prx-19 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19599 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00078.g3559 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07508 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009334 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08092 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_30276720 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8480 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00209580 Caenorhabditis japonica From_analysis: WormBase-Compara
      SGD:S000002223 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0032407 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050417-424 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:9713 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1334458 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306913 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: prx-19 is orthologous to the human gene PEROXISOMAL FARNESYLATED PROTEIN (PXF; OMIM:600279), which when mutated leads to peroxisome biogenesis (Zellweger) syndrome of complementation group J. Curator_confirmed: WBPerson1823
            WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable peroxisome membrane targeting sequence binding activity. Involved in nematode larval development. Predicted to be located in peroxisomal membrane. Expressed in pharynx. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 12A. Is an ortholog of human PEX19 (peroxisomal biogenesis factor 19). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080486 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9713)
  Molecular_info: Corresponding_CDS: F54F2.8
    Corresponding_transcript: F54F2.8.1
    Other_sequence (35)
    Associated_feature (14)
  Experimental_info: RNAi_result (18)
    Expr_pattern (6)
    Drives_construct: WBCnstr00035640
    Construct_product: WBCnstr00035640
    Microarray_results (21)
    Expression_cluster (111)
    Interaction (54)
  Map_info: Map: III Position: -0.048983 Error: 0.000456
    Positive: Positive_clone: F54F2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00030887
    WBPaper00038491
    WBPaper00055090
    WBPaper00059323
  Remark: Note that some Authors have incorrectly published prx genes as pex genes. pex genes are a separate class of gene not related to prx genes [JAH][030108 ck1]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene