WormBase Tree Display for Gene: WBGene00004198

WBGene00004198 SMap: S_parent: Sequence: F32A5
  Identity: Version: 1
    Name: CGC_name: prx-13
      Sequence_name: F32A5.6
      Molecular_name: F32A5.6
        F32A5.6.1
        CE28290
      Other_name: CELE_F32A5.6 Accession_evidence: NDB BX284602
      Public_name: prx-13
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: prx
    Allele (22)
    RNASeq_FPKM (74)
    GO_annotation (13)
    Ortholog: WBGene00054304 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033935 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00158959 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00135167 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00163865 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224001 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g7833 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9116 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6944 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12176 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9285 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11889 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6982 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11355 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18248 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g18719 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8357 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00586.g12511 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-prx-13 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold485.g1928 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00152.g5743 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09475 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006460 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11565 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g5762 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20259400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4978 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00216036 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00247812 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00112990 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00266490 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000004181 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0033812 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-1544 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:8855 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1919379 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1310682 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: prx-13 is orthologous to the human gene PEX13 (OMIM:601789), which when mutated leads to Zellweger syndrome or neonatal adrenoleukodystrophy. Curator_confirmed: WBPerson1823
            WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Involved in nematode larval development. Predicted to be located in peroxisomal membrane. Predicted to be part of peroxisomal importomer complex. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 11A. Is an ortholog of human PEX13 (peroxisomal biogenesis factor 13). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (2)
  Molecular_info: Corresponding_CDS: F32A5.6
    Corresponding_transcript: F32A5.6.1
    Other_sequence (33)
    Associated_feature: WBsf650218
      WBsf665679
      WBsf223317
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr1015320
      Expr1149968
      Expr2015121
      Expr2033359
    Drives_construct: WBCnstr00035642
    Construct_product: WBCnstr00035642
    Microarray_results (19)
    Expression_cluster (119)
    Interaction (59)
  Map_info: Map: II Position: 0.499802 Error: 4.1e-05
    Positive: Positive_clone: F32A5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005877
    WBPaper00038491
    WBPaper00055090
    WBPaper00056693
    WBPaper00059323
  Remark: Note that some Authors have incorrectly published prx genes as pex genes. pex genes are a separate class of gene not related to prx genes [JAH][030108 ck1]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene