WormBase Tree Display for Gene: WBGene00004091

WBGene00004091 Evidence: Author_evidence: Bergeron KF
  SMap: S_parent: Sequence: T14G10
  Identity: Version: 1
    Name: CGC_name: pps-1
      Sequence_name: T14G10.1
      Molecular_name: T14G10.1a
        T14G10.1a.1
        CE06447
        T14G10.1b
        CE49754
        T14G10.1b.1
      Other_name: CELE_T14G10.1 Accession_evidence: NDB BX284604
      Public_name: pps-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pps
    Allele (36)
    Strain: WBStrain00036362
      WBStrain00007579
    RNASeq_FPKM (74)
    GO_annotation (21)
    Contained_in_operon: CEOP4619
    Ortholog: WBGene00065657 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00026273 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00162021 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00098420 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00090246 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00226055 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8420 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g41 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11366 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2539 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22097 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20129 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2319 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6783 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g22136 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g24152 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g6500 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g13091 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00734.g13778 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13910.g24444 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-pps-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold585.g4786 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00074.g3444 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_03027.g28817 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16424 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014368 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03082 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g484 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40258400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11528 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00180072 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00241585 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00275160 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00257762 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00264578 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291339 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000001484 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0020389 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-010323-5 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-080721-5 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-061110-85 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:8604 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:8603 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1330587 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1330223 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1307012 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1308081 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: pps-1 is orthologous to human PAPSS1 (OMIM:603262) and human PAPSS2 (OMIM:603005, mutated in spondyloepimetaphyseal dysplasia). Curator_confirmed: WBPerson1823
            WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable adenylylsulfate kinase activity. Predicted to be involved in 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process and sulfate assimilation. Predicted to be located in nucleus. Expressed in epithelial cell and pharyngeal gland cell. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia, Pakistani type. Is an ortholog of human PAPSS1 (3'-phosphoadenosine 5'-phosphosulfate synthase 1) and PAPSS2 (3'-phosphoadenosine 5'-phosphosulfate synthase 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0050812 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:8604)
  Molecular_info: Corresponding_CDS: T14G10.1a
      T14G10.1b
    Corresponding_transcript: T14G10.1a.1
      T14G10.1b.1
    Other_sequence (83)
    Associated_feature (5)
  Experimental_info: RNAi_result: WBRNAi00115318 Inferred_automatically: RNAi_primary
      WBRNAi00053330 Inferred_automatically: RNAi_primary
      WBRNAi00035569 Inferred_automatically: RNAi_primary
      WBRNAi00070597 Inferred_automatically: RNAi_primary
      WBRNAi00070596 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1959
      Expr4395
      Expr4396
      Expr6696
      Expr1016543
      Expr1031975
      Expr1156916
      Expr2015021
      Expr2033256
    Drives_construct: WBCnstr00002978
      WBCnstr00011963
      WBCnstr00011964
      WBCnstr00035705
    Construct_product: WBCnstr00011964
      WBCnstr00035705
    Microarray_results (21)
    Expression_cluster (117)
    Interaction (40)
  Map_info: Map: IV Position: 4.5514 Error: 0.001015
    Positive: Positive_clone: T14G10 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5525
        4743
        5002
    Pseudo_map_position
  Reference: WBPaper00027123
    WBPaper00027857
    WBPaper00031295
    WBPaper00033574
    WBPaper00035539
    WBPaper00038491
    WBPaper00040922
    WBPaper00045573
    WBPaper00055090
    WBPaper00065026
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene