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WormBase Tree Display for Gene: WBGene00003687

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Name Class

WBGene00003687SMapS_parentSequenceCHROMOSOME_IV
IdentityVersion1
NameCGC_namenhr-97Person_evidenceWBPerson600
Sequence_nameH27C11.1
Molecular_nameH27C11.1a
H27C11.1a.1
CE31027
H27C11.1b
CE39262
H27C11.1a.2
H27C11.1b.1
H27C11.1b.2
Other_nameCELE_H27C11.1Accession_evidenceNDBBX284604
Public_namenhr-97
DB_infoDatabaseWormQTLgeneWBGene00003687
WormFluxgeneWBGene00003687
NDBlocus_tagCELE_H27C11.1
PanthergeneCAEEL|WormBase=WBGene00003687|UniProtKB=Q9BJK5
familyPTHR47519
NCBIgene177810
RefSeqproteinNM_001392373.1
NM_001047489.5
SwissProtUniProtAccQ9BJK5
TREEFAMTREEFAM_IDTF315278
UniProt_GCRPUniProtAccQ9BJK5
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (68)
RNASeq_FPKM (74)
GO_annotation00091534
00091535
00091536
00091537
00111545
00111546
00111547
00111548
OrthologWBGene00070313Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00074009Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00035366Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00149536Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00147296Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00122566Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g11337Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2300Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20646Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g11866Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3938Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15713Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2401Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g6171Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27495Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g13870Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00526.g11870Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nhr-97Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20332Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00540.g12611Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21677Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013258Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10487Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g19240Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40251500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11400Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00267304Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00301869Trichuris murisFrom_analysisWormBase-Compara
WBGene00301928Trichuris murisFrom_analysisWormBase-Compara
Paralog (15)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSH27C11.1a
H27C11.1b
Corresponding_CDS_historyH27C11.1:wp80
Corresponding_transcriptH27C11.1a.1
H27C11.1a.2
H27C11.1b.1
H27C11.1b.2
Other_sequenceHG10379
CBC13154_1
CGC00782_1
BUC00409_1
BXC03820_1
HGC09044_1
CR05992
CGC00625_1
CRC01413_1
Associated_featureWBsf655047
WBsf660521
WBsf716787
WBsf978783
WBsf997472
WBsf1017997
Transcription_factorWBTranscriptionFactor000458
Experimental_infoRNAi_result (5)
Expr_patternExpr1024195
Expr1031715
Expr1153222
Expr2014249
Expr2032490
Drives_constructWBCnstr00035946
Construct_productWBCnstr00035946
Microarray_results (30)
Expression_cluster (139)
InteractionWBInteraction000258961
WBInteraction000543031
Map_infoMapIVPosition4.40086Error0.000949
PositivePositive_cloneH27C11Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4175
Pseudo_map_position
ReferenceWBPaper00027309
WBPaper00041549
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene