WormBase Tree Display for Gene: WBGene00002850

WBGene00002850 SMap: S_parent: Sequence: C16A3
  Identity: Version: 2
    Name: CGC_name: let-716 Person_evidence: WBPerson533
      Sequence_name: C16A3.3
      Molecular_name: C16A3.3
        C16A3.3.1
        CE27690
      Other_name: CELE_C16A3.3 Accession_evidence: NDB BX284603
      Public_name: let-716
    DB_info: Database: WormQTL gene WBGene00002850
        WormFlux gene WBGene00002850
        NDB locus_tag CELE_C16A3.3
        Panther gene CAEEL|WormBase=WBGene00002850|UniProtKB=Q18038
          family PTHR23270
        NCBI gene 175906
        RefSeq protein NM_065997.5
        TREEFAM TREEFAM_ID TF105697
        TrEMBL UniProtAcc Q18038
        UniProt_GCRP UniProtAcc Q18038
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:29 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 30 Jan 2008 10:06:04 WBPerson2970 Event: Acquires_merge: WBGene00015808
              Name_change: Sequence_name: C16A3.3
      Acquires_merge: WBGene00015808
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: let
    Allele (64)
    Legacy_information: [Stewart HI] homozygotes arrest at early larval stage
      [C.elegansII] s2457 : early larval lethal. OA1: s2626 (similar). [BC]
    Strain: WBStrain00000771
    RNASeq_FPKM (74)
    GO_annotation: 00060046
      00060047
      00060048
      00060049
      00060050
      00110407
      00110408
      00110409
    Contained_in_operon: CEOP3368
    Ortholog: WBGene00030772 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00055469 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00141803 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137548 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222497 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5094 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6508 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21395 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g122 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21691 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g22727 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g22729 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g13397 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15821 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11891 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2043 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g3619 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00207.g7014 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-let-716 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16119 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02190.g25323 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_03645.g30846 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16439 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010724 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13908 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10881 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30171200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7927 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00214377 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00245717 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00118957 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263529 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290908 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004842 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0039182 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-030131-4076 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:13408 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1341788 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1304933 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Is an ortholog of human PDCD11 (programmed cell death 11). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C16A3.3
    Corresponding_transcript: C16A3.3.1
    Other_sequence (35)
    Associated_feature: WBsf659070
      WBsf225096
  Experimental_info (6)
  Map_info: Map: III Position: -1.31646 Error: 0.00703
    Well_ordered
    Positive: Inside_rearr: sDf127
        sDf125
        sDp3
      Positive_clone: C16A3 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 3328
      Pos_neg_data: 8680
        8695
        8708
        8711
        8753
        8770
        9198
  Reference: WBPaper00002901
    WBPaper00003304
    WBPaper00015389
    WBPaper00023496
    WBPaper00028451
    WBPaper00031176
    WBPaper00038491
    WBPaper00055090
  Remark: Rescue for s2457 was to fertile adult and for s2626 to sterile adult from early larval arrest stages.
  Method: Gene