WormBase Tree Display for Gene: WBGene00001808

WBGene00001808 Evidence: Person_evidence: WBPerson1846
  SMap: S_parent: Sequence: T10G3
  Identity: Version: 1
    Name: CGC_name: gut-2 Person_evidence: WBPerson579
      Sequence_name: T10G3.6
      Molecular_name: T10G3.6a
        T10G3.6a.1
        CE37990
        T10G3.6b
        CE45330
        T10G3.6b.1
      Other_name: lsm-2 CGC_data_submission
        CELE_T10G3.6 Accession_evidence: NDB BX284605
      Public_name: gut-2
    DB_info: Database: AceView gene 5N979
        WormQTL gene WBGene00001808
        WormFlux gene WBGene00001808
        NDB locus_tag CELE_T10G3.6
        Panther gene CAEEL|WormBase=WBGene00001808|UniProtKB=P92022
          family PTHR13829
        NCBI gene 179833
        RefSeq protein NM_001269582.2
            NM_001269583.3
        TREEFAM TREEFAM_ID TF314960
        TrEMBL UniProtAcc P92022
            E1B6V1
        UniProt_GCRP UniProtAcc P92022
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:25 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gut
    Allele (31)
    Legacy_information (2)
    Strain: WBStrain00036163
      WBStrain00036228
    RNASeq_FPKM (74)
    GO_annotation (19)
    Ortholog: WBGene00052810 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00178269 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00219508 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00225169 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g752 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11031 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g19820 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g3074 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g19093 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g12092 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8261 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1971 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9165 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7743 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-gut-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold282.g735 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_03811 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_018587 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04456 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g23206 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50160300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g16259 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00239021 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00112087 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00264816 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290231 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301162 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000122 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0036277 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-000616-10 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:13940 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:90676 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1598536 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
    Structured_description: Concise_description: gut-2 encodes a member of the Sm protein family with highest similarity to human U6 snRNA-associated Sm-like protein, LSm2, that affects embryonic viability. Paper_evidence: WBPaper00012624
            WBPaper00023072
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in P-body. Predicted to be part of Lsm1-7-Pat1 complex and ribonucleoprotein complex. Is an ortholog of human LSM2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T10G3.6a
      T10G3.6b
    Corresponding_CDS_history: T10G3.6:wp138
    Corresponding_transcript: T10G3.6a.1
      T10G3.6b.1
    Other_sequence (54)
    Associated_feature: WBsf647462
      WBsf662028
      WBsf232784
  Experimental_info: RNAi_result (28)
    Expr_pattern: Expr1016964
      Expr1031059
      Expr1156677
      Expr2012349
      Expr2030585
    Microarray_results (20)
    Expression_cluster (131)
    Interaction (330)
  Map_info: Map: V Position: 5.35258 Error: 0.004597
    Well_ordered
    Positive: Positive_clone: K10B8
        T10G3 Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Negative_clone: R11G10
    Mapping_data: 2_point: 7109
      Multi_point: 3848
  Reference: WBPaper00012624
    WBPaper00014687
    WBPaper00015015
    WBPaper00021955
    WBPaper00022720
    WBPaper00023072
    WBPaper00038491
    WBPaper00046572
    WBPaper00055090
    WBPaper00059527
  Remark: The gut-2 gene was merged with lsm-2 following advice from the CGC. gut-2 is the main name for this gene. CGC_data_submission
  Method: Gene