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WormBase Tree Display for Gene: WBGene00001777

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Name Class

WBGene00001777EvidencePerson_evidenceWBPerson1846
SMapS_parentSequenceY53F4B
IdentityVersion1
NameCGC_namegst-29
Sequence_nameY53F4B.32
Molecular_nameY53F4B.32
Y53F4B.32.1
CE22419
Other_nameCELE_Y53F4B.32Accession_evidenceNDBBX284602
Public_namegst-29
DB_infoDatabaseAceViewgene2P456
WormQTLgeneWBGene00001777
WormFluxgeneWBGene00001777
NDBlocus_tagCELE_Y53F4B.32
PanthergeneCAEEL|WormBase=WBGene00001777|UniProtKB=Q9NAB1
familyPTHR11571
NCBIgene190225
RefSeqproteinNM_064717.2
TREEFAMTREEFAM_IDTF353041
TrEMBLUniProtAccQ9NAB1
UniProt_GCRPUniProtAccQ9NAB1
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgst
Allele (24)
RNASeq_FPKM (74)
GO_annotation00095920
OrthologWBGene00091237Pristionchus pacificusFrom_analysisOMA
WBGene00095888Pristionchus pacificusFrom_analysisOMA
WBGene00099365Pristionchus pacificusFrom_analysisOMA
WBGene00115637Pristionchus pacificusFrom_analysisOMA
WBGene00111073Pristionchus pacificusFrom_analysisOMA
WBGene00133780Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00153681Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00151440Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00143198Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00154128Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00153527Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00057528Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00135406Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00090695Pristionchus pacificusFrom_analysisOMA
WBGene00099367Pristionchus pacificusFrom_analysisOMA
WBGene00039593Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CBOVI.g1796Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g5493Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g5515Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g6759Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g10536Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g16863Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17220Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g17221Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27251Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g3606Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g3607Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8423Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g24440Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29042Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9988Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5063Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00111.g4610Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00111.g4611Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00270.g8226Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g6585Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11279Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00184.g6534Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05905Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005854Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_20078800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_20224500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g6670Caenorhabditis elegansFrom_analysisWormBase-Compara
FB:FBgn0010226Drosophila melanogasterFrom_analysisOrthoFinder
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-040426-2720Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-070822-30Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
HGNC:17890Homo sapiensFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:1859384Mus musculusFrom_analysisOrthoFinder
OrthoInspector
PhylomeDB
RGD:69251Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
Paralog (45)
Structured_descriptionAutomated_descriptionEnriched in muscle cell; neurons; and retrovesicular ganglion based on microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and proteomic studies. Is affected by eighteen chemicals including Heme; Zidovudine; and Sodium Chloride based on microarray and RNA-seq studies. Human HPGDS enables metal ion binding activity; prostaglandin-D synthase activity; and protein homodimerization activity. Is predicted to encode a protein with the following domains: Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; Glutathione S-transferase, C-terminal domain superfamily; Glutathione S-transferase, C-terminal; and Thioredoxin-like superfamily. Is an ortholog of human HPGDS (hematopoietic prostaglandin D synthase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY53F4B.32
Corresponding_transcriptY53F4B.32.1
Other_sequencePPC07632_1
SS00080
Associated_featureWBsf224321
Experimental_infoRNAi_resultWBRNAi00115543Inferred_automaticallyRNAi_primary
WBRNAi00020945Inferred_automaticallyRNAi_primary
WBRNAi00115478Inferred_automaticallyRNAi_primary
WBRNAi00057288Inferred_automaticallyRNAi_primary
WBRNAi00037426Inferred_automaticallyRNAi_primary
Expr_patternExpr1024909
Expr1160725
Expr2012313
Expr2030549
Drives_constructWBCnstr00036694
Construct_productWBCnstr00036694
Microarray_results (15)
Expression_cluster (187)
InteractionWBInteraction000503299
WBInteraction000582977
Map_info (3)
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00056842
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene