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WormBase Tree Display for Gene: WBGene00001664

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Name Class

WBGene00001664SMapS_parentSequenceF38E1
IdentityVersion1
NameCGC_namegpa-2Person_evidenceWBPerson625
Sequence_nameF38E1.5
Molecular_name (3)
Other_nameCELE_F38E1.5Accession_evidenceNDBBX284605
Public_namegpa-2
DB_infoDatabaseAceViewgene5I853
WormQTLgeneWBGene00001664
WormFluxgeneWBGene00001664
NDBlocus_tagCELE_F38E1.5
PanthergeneCAEEL|WormBase=WBGene00001664|UniProtKB=P22454
familyPTHR10218
NCBIgene179219
RefSeqproteinNM_072756.5
SwissProtUniProtAccP22454
UniProt_GCRPUniProtAccP22454
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgpa
Allele (41)
Legacy_information[C.elegansII] pk19, pk2, pk23, pk24, pk16. Tc1 insertion, also excision derivatives: no obvious phenotype, some reduction in dauer formation, stronger with gpa-3(O). Cloned: gpa-2:lacZ expressed in phasmid neurons, some nerve ring neurons, PVT, sphincter. [Lochrie et al. 1991; PS; NL]
StrainWBStrain00028899
WBStrain00028902
WBStrain00007863
RNASeq_FPKM (74)
GO_annotation (25)
OrthologWBGene00053066Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00032418Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00127394Caenorhabditis japonicaFrom_analysisOMA
WBGene00158489Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00147337Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00140398Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00190049Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00160755Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00190191Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00148839Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00191573Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00144378Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00192033Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00128777Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00123339Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00120420Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00066585Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00070292Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00070852Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00060960Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00058761Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00064959Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00227975Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g1610Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7202Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20572Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4103Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17065Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g16233Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17462Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g15496Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4169Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g2889Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00210.g7087Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-gpa-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g22271Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00999.g17429Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17047Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018826Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00773Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9124Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50111300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g14971Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00263918Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000001047Saccharomyces cerevisiaeFrom_analysisPanther
PhylomeDB
SonicParanoid
Paralog (21)
Structured_descriptionConcise_descriptiongpa-2 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that is involved in dauer formation and chemotaxis to water-soluble odorants; it is expressed in the phasmid neurons PHA and PHB, three pharyngeal neurons, one interneuron, three pairs of head neurons, and the anal sphincter muscle.Curator_confirmedWBPerson48
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Involved in several processes, including defense response to Gram-negative bacterium; olfactory learning; and positive regulation of gene expression. Located in axon; neuronal cell body; and non-motile cilium. Expressed in anal sphincter muscle; ganglia; and pharyngeal cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF38E1.5
Corresponding_transcriptF38E1.5.1
Associated_featureWBsf1000639
WBsf1000640
WBsf1020020
WBsf232099
Experimental_infoRNAi_resultWBRNAi00103344Inferred_automaticallyRNAi_primary
WBRNAi00046709Inferred_automaticallyRNAi_primary
WBRNAi00103347Inferred_automaticallyRNAi_primary
WBRNAi00014559Inferred_automaticallyRNAi_primary
WBRNAi00014563Inferred_automaticallyRNAi_primary
WBRNAi00046710Inferred_automaticallyRNAi_primary
Expr_patternExpr538
Expr539
Expr3065
Expr1023128
Expr1150590
Expr2012191
Expr2030427
Marker43
Drives_constructWBCnstr00001699
WBCnstr00004639
WBCnstr00004642
WBCnstr00012427
WBCnstr00012428
WBCnstr00036791
Construct_productWBCnstr00001699
WBCnstr00004642
WBCnstr00012427
WBCnstr00012428
WBCnstr00036791
AntibodyWBAntibody00000769
Microarray_results (20)
Expression_cluster (118)
Interaction (17)
Anatomy_functionWBbtf0865
WBbtf0866
Map_infoMapVPosition1.34551Error0.005648
PositivePositive_cloneF38E1Inferred_automaticallyFrom sequence, transcript, pseudogene data
RP#G3/2
Mapping_dataMulti_point4368
Pseudo_map_position
Reference (70)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene