WormBase Tree Display for Gene: WBGene00001232

WBGene00001232 Evidence: Person_evidence: WBPerson599
  SMap: S_parent: Sequence: Y74C10AR
  Identity: Version: 1
    Name (5)
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: eif
    Allele (108)
    RNASeq_FPKM (74)
    GO_annotation (16)
    Contained_in_operon: CEOP1048
    Ortholog: WBGene00072771 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00026744 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00157278 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00139397 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00136098 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00108158 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g9145 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4208 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17388 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g3733 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g11116 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7479 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7502 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21274 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6207 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17042 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-eif-3.I Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g17133 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_10418 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05815 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_10283600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g344 Caenorhabditis elegans From_analysis: WormBase-Compara
      SGD:S000004754 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0015834 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1922 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:3272 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1860763 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1584560 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable RNA binding activity and translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Is an ortholog of human EIF3I (eukaryotic translation initiation factor 3 subunit I). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y74C10AR.1a
      Y74C10AR.1b
    Corresponding_transcript: Y74C10AR.1a.1
      Y74C10AR.1b.1
    Other_sequence (90)
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00096910 Inferred_automatically: RNAi_primary
      WBRNAi00058408 Inferred_automatically: RNAi_primary
      WBRNAi00085626 Inferred_automatically: RNAi_primary
      WBRNAi00110765 Inferred_automatically: RNAi_primary
      WBRNAi00091064 Inferred_automatically: RNAi_primary
      WBRNAi00096970 Inferred_automatically: RNAi_primary
      WBRNAi00037829 Inferred_automatically: RNAi_primary
      WBRNAi00000865 Inferred_automatically: RNAi_primary
      WBRNAi00004593 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021878
      Expr1030780
      Expr1161827
      Expr2011259
      Expr2029495
    Microarray_results (22)
    Expression_cluster (137)
    Interaction (154)
  Map_info: Map: I Position: -8.48314 Error: 0.024591
    Positive: Positive_clone: Y74C10AR Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027281
    WBPaper00038491
    WBPaper00046427
    WBPaper00049828
    WBPaper00055090
    WBPaper00063819
  Remark: The capital letters are used here to distinguish the different eIF3 subunit genes. This roughly agrees with worm gene nomenclature and it makes clear the orthologies for these universal factors (eif-3B corresponding to eIF3b, and so on), in the unified eIF3 nomenclature proposed by Browning KS et al (2001)[JAH][030106 ck1]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene