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WormBase Tree Display for Gene: WBGene00000967

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Name Class

WBGene00000967SMapS_parentSequenceT02E1
IdentityVersion2
NameCGC_namedhs-3Person_evidenceWBPerson651
Sequence_nameT02E1.5
Molecular_nameT02E1.5a
T02E1.5a.1
CE41004
T02E1.5b
CE41005
T02E1.5c
CE41006
T02E1.5b.1
T02E1.5c.1
Other_nameCELE_T02E1.5Accession_evidenceNDBBX284601
Public_namedhs-3
DB_infoDatabaseWormQTLgeneWBGene00000967
WormFluxgeneWBGene00000967
NDBlocus_tagCELE_T02E1.5
PanthergeneCAEEL|WormBase=WBGene00000967|UniProtKB=A5JYX5
familyPTHR24322
NCBIgene172603
RefSeqproteinNM_001129038.4
NM_001129037.4
NM_001129036.4
SwissProtUniProtAccA5JYX5
UniProt_GCRPUniProtAccA5JYX5
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:22WBPerson1971EventImportedInitial conversion from geneace
227 Apr 2007 10:07:20WBPerson1983EventAcquires_mergeWBGene00011377
Acquires_mergeWBGene00011377
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdhs
Allele (77)
RNASeq_FPKM (74)
GO_annotation00004817
00004818
00004819
00004820
00004821
00004822
00004823
00004824
00004825
00004826
OrthologWBGene00057060Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00026879Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00150564Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00122000Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g10687Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6762Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2519Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g3682Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11227Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9768Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8968Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21204Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3072Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10836Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00177.g6283Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-dhs-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17010Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00028.g1584Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22492Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000959Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g10430Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18536Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g2365Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10137110Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1536Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00210239Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00101158Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00106928Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00291758Trichuris murisFrom_analysisWormBase-Compara
WBGene00296581Trichuris murisFrom_analysisWormBase-Compara
WBGene00301657Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002272Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OMA
Panther
FB:FBgn0031630Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
FB:FBgn0032910Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
Panther
SonicParanoid
ZFIN:ZDB-GENE-030909-7Danio rerioFrom_analysisEnsEMBL-Compara
OMA
Panther
ZFIN:ZDB-GENE-040426-2049Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-2861Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-131127-122Danio rerioFrom_analysisEnsEMBL-Compara
OMA
Panther
ZFIN:ZDB-GENE-070112-2242Danio rerioFrom_analysisEnsEMBL-Compara
OMA
Panther
ZFIN:ZDB-GENE-041014-340Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:30311Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2668443Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2685269Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1565999Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1562060Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Paralog (38)
Structured_description (2)
Molecular_infoCorresponding_CDST02E1.5a
T02E1.5b
T02E1.5c
Corresponding_CDS_historyT02E1.5:wp175
Corresponding_transcriptT02E1.5a.1
T02E1.5b.1
T02E1.5c.1
Other_sequence (79)
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00035060Inferred_automaticallyRNAi_primary
WBRNAi00004105Inferred_automaticallyRNAi_primary
WBRNAi00052211Inferred_automaticallyRNAi_primary
WBRNAi00116815Inferred_automaticallyRNAi_primary
WBRNAi00001281Inferred_automaticallyRNAi_primary
WBRNAi00052212Inferred_automaticallyRNAi_primary
WBRNAi00035059Inferred_automaticallyRNAi_primary
Expr_patternExpr12410
Expr14388
Expr16186
Expr16187
Expr1018894
Expr1030602
Expr1155843
Expr2010917
Expr2029156
Drives_construct (3)
Construct_productWBCnstr00020984
WBCnstr00021891
WBCnstr00022296
WBCnstr00023090
WBCnstr00037172
AntibodyWBAntibody00002328
Microarray_results (34)
Expression_cluster (243)
Interaction (120)
Map_infoMapIPosition2.659Error0.008209
PositivePositive_cloneT02E1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (22)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene