WormBase Tree Display for Gene: WBGene00000935
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WBGene00000935 | SMap | S_parent | Sequence | F56D1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | daz-1 | Person_evidence | WBPerson634 | |||||
Sequence_name | F56D1.7 | ||||||||
Molecular_name | F56D1.7 | ||||||||
F56D1.7.1 | |||||||||
CE27175 | |||||||||
Other_name | CELE_F56D1.7 | Accession_evidence | NDB | BX284602 | |||||
Public_name | daz-1 | ||||||||
DB_info | Database | AceView | gene | 2F747 | |||||
WormQTL | gene | WBGene00000935 | |||||||
WormFlux | gene | WBGene00000935 | |||||||
NDB | locus_tag | CELE_F56D1.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000935|UniProtKB=Q20870 | |||||||
family | PTHR11176 | ||||||||
NCBI | gene | 173931 | |||||||
RefSeq | protein | NM_062635.5 | |||||||
SwissProt | UniProtAcc | Q20870 | |||||||
TREEFAM | TREEFAM_ID | TF324396 | |||||||
UniProt_GCRP | UniProtAcc | Q20870 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | daz | ||||||||
Allele (32) | |||||||||
Legacy_information | [Sugimoto A] encodes a protein similar to human DAZ (Deleted in Azoospermia), includes a RNP-type RNA-binding motif and a DAZ-family-specific motif, tj3 (deletion allele) is defective in progression of meiosis during oogenesis, spermatogenesis unaffected. | ||||||||
Strain | WBStrain00033879 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog | WBGene00057360 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00025463 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WormBase-Compara | |||||||||
WBGene00132242 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00224734 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CSP21.g2489 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g21943 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g8385 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g14632 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g23120 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g11414 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g7397 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g12502 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g7145 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-daz-1 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g11402 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00346.g9848 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_06061 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_006033 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Pan_g1499 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_20105210 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g4505 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00244478 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00109592 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00285593 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
FB:FBgn0011206 | Drosophila melanogaster | From_analysis | OrthoFinder | ||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
ZFIN:ZDB-GENE-000405-6 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
HGNC:2682 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
HGNC:2685 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
HGNC:15965 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
HGNC:15964 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
HGNC:15966 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
HGNC:14273 | Homo sapiens | From_analysis | OrthoInspector | ||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
MGI:1342328 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
MGI:1922638 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
OrthoInspector | |||||||||
Panther | |||||||||
SonicParanoid | |||||||||
RGD:1559527 | Rattus norvegicus | From_analysis | OrthoInspector | ||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
RGD:1591714 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
Structured_description | Concise_description | daz-1 encodes a protein containing an RNA recognition motif that is required for the progression of meiosis during oogenesis; DAZ-1 is expressed in the germline, and expression levels peak in the proximal pachytene region; cpb-3(bt17);daz-1(tj3) hermaphrodites have a synthetic phenotype of total sterility and masculinization; DAZ-1 colocalizes with CPB-3 invivo, coimmunoprecipitates with CPB-3, and binds CPB-3 in two-hybrid assays. | Paper_evidence | WBPaper00003942 | |||||
WBPaper00027619 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 19 Apr 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable mRNA 3'-UTR binding activity and translation activator activity. Predicted to be involved in 3'-UTR-mediated mRNA stabilization and positive regulation of translational initiation. Located in cytoplasm. Expressed in germ line; gonad; and in male. Is an ortholog of several human genes including DAZ1 (deleted in azoospermia 1); DAZ2 (deleted in azoospermia 2); and DAZ3 (deleted in azoospermia 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F56D1.7 | |||||||
Corresponding_transcript | F56D1.7.1 | ||||||||
Other_sequence (103) | |||||||||
Associated_feature | WBsf987888 | ||||||||
WBsf987889 | |||||||||
WBsf987890 | |||||||||
WBsf987891 | |||||||||
WBsf1012231 | |||||||||
Experimental_info (9) | |||||||||
Map_info | Map | II | Position | -1.40837 | Error | 0.030556 | |||
Positive | Positive_clone | F56D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4253 | |||||||
4538 | |||||||||
Pseudo_map_position | |||||||||
Reference (36) | |||||||||
Remark | Sequence connection updated to .7 rather than .5 following advice of Danielle Thierry-Mieg. 02/06/12 krb. | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |