WormBase Tree Display for Gene: WBGene00000721
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WBGene00000721 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | C12D8 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | col-148 | Person_evidence | WBPerson345 | |||||
Sequence_name | C12D8.8 | ||||||||
Molecular_name | C12D8.8 | ||||||||
C12D8.8.1 | |||||||||
CE05271 | |||||||||
Other_name | CELE_C12D8.8 | Accession_evidence | NDB | BX284605 | |||||
Public_name | col-148 | ||||||||
DB_info | Database | AceView | gene | 5K723 | |||||
WormQTL | gene | WBGene00000721 | |||||||
WormFlux | gene | WBGene00000721 | |||||||
NDB | locus_tag | CELE_C12D8.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000721|UniProtKB=Q17939 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 182542 | |||||||
RefSeq | protein | NM_073234.2 | |||||||
TREEFAM | TREEFAM_ID | TF316783 | |||||||
TrEMBL | UniProtAcc | Q17939 | |||||||
UniProt_GCRP | UniProtAcc | Q17939 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (27) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00059680 | ||||||||
00059681 | |||||||||
00059682 | |||||||||
00107709 | |||||||||
Ortholog | WBGene00059101 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00031126 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00156285 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00124399 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
CSP26.g16411 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g4402 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g18024 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP32.g524 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP39.g24557 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g2266 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-col-148 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_02623.g27278 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_07750 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_017573 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g15466 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (39) | |||||||||
Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C12D8.8 | |||||||
Corresponding_transcript | C12D8.8.1 | ||||||||
Other_sequence | AA618790.1 | ||||||||
EX537543.1 | |||||||||
BF400520.1 | |||||||||
AA618749.1 | |||||||||
SSC00240_1 | |||||||||
FG647852.1 | |||||||||
Associated_feature | WBsf647146 | ||||||||
Experimental_info | RNAi_result | WBRNAi00040398 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028828 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010656 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018718 | ||||||||
Expr1144467 | |||||||||
Expr2010342 | |||||||||
Expr2028585 | |||||||||
Drives_construct | WBCnstr00037337 | ||||||||
Construct_product | WBCnstr00037337 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (55) | |||||||||
Interaction (23) | |||||||||
Map_info | Map | V | Position | 2.40889 | Error | 0.006015 | |||
Positive | Positive_clone | C12D8 | Inferred_automatically (2) | ||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |