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WormBase Tree Display for Gene: WBGene00000700

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Name Class

WBGene00000700EvidencePerson_evidenceWBPerson345
WBPerson651
SMapS_parentSequenceF54D1
IdentityVersion1
NameCGC_namecol-126Person_evidenceWBPerson345
Sequence_nameF54D1.2
Molecular_nameF54D1.2
F54D1.2.1
CE05937
Other_nameCELE_F54D1.2Accession_evidenceNDBBX284604
Public_namecol-126
DB_infoDatabaseAceViewgene4M29
WormFluxgeneWBGene00000700
NDBlocus_tagCELE_F54D1.2
PanthergeneCAEEL|WormBase=WBGene00000700|UniProtKB=G5EFU8
familyPTHR24637
NCBIgene178034
RefSeqproteinNM_069714.2
TREEFAMTREEFAM_IDTF316783
TrEMBLUniProtAccG5EFU8
UniProt_GCRPUniProtAccG5EFU8
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
AlleleWBVar01500079
WBVar01498996
WBVar01499925
WBVar01499585
WBVar01499586
WBVar01500245
RNASeq_FPKM (74)
GO_annotation00018857
00018858
00107692
OrthologWBGene00062557Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00028389Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
WormBase-Compara
WBGene00121611Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00146964Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00164354Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00159517Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00163988Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00177149Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00210360Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00138461Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00124289Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00221975Brugia malayiFrom_analysisWormBase-Compara
WBGene00223115Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g1744Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g1745Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g1746Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14354Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g6203Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15730Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g19345Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4637Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18146Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26157Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g26158Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g12378Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g2138Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g2151Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g7010Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g23080Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14727Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00424.g10674Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13979Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g13981Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8060Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_10197.g39900Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21456Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014085Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_014086Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01731Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12367Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11816Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18926Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40317620Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40317700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11812Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00127556Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00062558Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00246154Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00095974Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00259395Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00261024Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00261472Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00262484Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00264000Strongyloides rattiFrom_analysisWormBase-Compara
Paralog (40)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF54D1.2
Corresponding_CDS_historyF54D1.2:wp196
F54D1.2:wp231
Corresponding_transcriptF54D1.2.1
Other_sequence (72)
Associated_featureWBsf229124
Experimental_infoRNAi_resultWBRNAi00048279Inferred_automaticallyRNAi_primary
WBRNAi00015595Inferred_automaticallyRNAi_primary
WBRNAi00032772Inferred_automaticallyRNAi_primary
WBRNAi00048280Inferred_automaticallyRNAi_primary
Expr_patternExpr1021644
Expr1152081
Drives_constructWBCnstr00037357
Construct_productWBCnstr00037357
Microarray_results (19)
Expression_cluster (116)
SAGE_tag (2)
Interaction (70)
Map_infoMapIVPosition4.93363
PositivePositive_cloneF54D1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00025192
WBPaper00055090
WBPaper00059172
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene