WormBase Tree Display for Gene: WBGene00000652
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WBGene00000652 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | M110 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | col-76 | Person_evidence | WBPerson345 | |||||
Sequence_name | M110.1 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_M110.1 | Accession_evidence | NDB | BX284602 | |||||
Public_name | col-76 | ||||||||
DB_info | Database | AceView | gene | 2I497 | |||||
WormQTL | gene | WBGene00000652 | |||||||
WormFlux | gene | WBGene00000652 | |||||||
NDB | locus_tag | CELE_M110.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000652|UniProtKB=Q21528 | |||||||
family | PTHR24023 | ||||||||
NCBI | gene | 174320 | |||||||
RefSeq | protein | NM_063325.7 | |||||||
TrEMBL | UniProtAcc | Q21528 | |||||||
UniProt_GCRP | UniProtAcc | Q21528 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (38) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00072007 | ||||||||
00072008 | |||||||||
00072009 | |||||||||
00107649 | |||||||||
Ortholog | WBGene00053816 | Caenorhabditis remanei | From_analysis | OMA | |||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00024063 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00145590 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00125204 | Caenorhabditis japonica | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
CBOVI.g6377 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g1504 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g58 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP29.g6407 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP40.g19277 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-col-76 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
FL83_08761 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g14844 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Sp34_20142200 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g5187 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00247991 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00266994 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
WBGene00288779 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
RGD:2377 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
Inparanoid | |||||||||
Paralog (162) | |||||||||
Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | M110.1 | |||||||
Corresponding_CDS_history | M110.1:wp111 | ||||||||
Corresponding_transcript | M110.1.1 | ||||||||
Other_sequence | CR03713 | ||||||||
CRC03137_1 | |||||||||
CR09653 | |||||||||
LSC01108_1 | |||||||||
CR01056 | |||||||||
CBC07388_1 | |||||||||
DN558279.1 | |||||||||
Associated_feature | WBsf644449 | ||||||||
WBsf657946 | |||||||||
WBsf657947 | |||||||||
WBsf988672 | |||||||||
WBsf221707 | |||||||||
Experimental_info | RNAi_result | WBRNAi00050942 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00033304 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00115371 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1013722 | ||||||||
Expr1030383 | |||||||||
Expr1154644 | |||||||||
Expr2010423 | |||||||||
Expr2028664 | |||||||||
Drives_construct | WBCnstr00037398 | ||||||||
Construct_product | WBCnstr00037398 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (221) | |||||||||
Interaction (20) | |||||||||
Map_info | Map | II | Position | 0.749859 | Error | 8.8e-05 | |||
Positive | Positive_clone | M110 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |