Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00000266

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00000266SMapS_parentSequenceC53B4
IdentityVersion2
NameCGC_namebre-1Person_evidenceWBPerson26
Sequence_nameC53B4.7
Molecular_name (15)
Other_namegmd-1Paper_evidenceWBPaper00028852
Person_evidenceWBPerson2099
CELE_C53B4.7Accession_evidenceNDBBX284604
Public_namebre-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
215 Dec 2006 14:54:17WBPerson1847EventAcquires_mergeWBGene00008276
Name_changeOther_namegmd-1
Acquires_mergeWBGene00008276
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classbre
Allele (43)
Legacy_information[Marroquin LD, Aroian RV ] Weakly resistant to Bt toxin, Cry5B
StrainWBStrain00001304
WBStrain00008570
RNASeq_FPKM (74)
GO_annotation (23)
OrthologWBGene00040436Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00152196Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00130469Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00063875Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00145413Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00152629Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00155452Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00080122Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00084107Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00223168Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g11632Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10424Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2995Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12602Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4071Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g18297Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12999Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8864Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g22173Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24370Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5538Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1377Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00096.g4243Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00096.g4244Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_08906.g21770Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13072Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10870Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00611.g13545Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_09953Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013365Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_013368Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13666Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g8886Panagrellus redivivusFrom_analysisWormBase-Compara
chrIV_pilon.g11210Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240949Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00089604Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275366Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00305226Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00264002Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288478Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0031661Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050419-45Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:4369Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1891112Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1311008Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Paralog (13)
Structured_descriptionConcise_descriptionbre-1 encodes one of two C. elegans GDP-mannose 4, 6-dehydratases; BRE-1 exhibits GDP-mannose dehydratase activity when expressed in vitro and thus, is predicted to function in vivo in the first step of the biosynthetic pathway that synthesizes GDP-fucose from GDP-mannose; bre-1 is required for toxicity to Cry5B, a Bacillus thurigensis delta-endotoxin, as mutant animals are defective for production of fucosylated glycolipids that act as a receptor for Cry5B; bre-1 mutant animals are also resistant to a fungal toxin Coprinopsis cinerea CGL2; bre-1 mutant animals demonstrate lack of fucosylated N- and O-glycans; bre-1 is expressed in larval and adult stages.Paper_evidenceWBPaper00004264
WBPaper00027362
WBPaper00028852
WBPaper00035585
Curator_confirmed (2)
Date_last_updated09 Apr 2010 00:00:00
Automated_descriptionEnables GDP-mannose 4,6-dehydratase activity. Involved in GDP-L-fucose biosynthetic process; GDP-mannose metabolic process; and response to toxic substance. Located in endoplasmic reticulum; sarcomere; and striated muscle dense body. Human ortholog(s) of this gene implicated in open-angle glaucoma. Is an ortholog of human GMDS (GDP-mannose 4,6-dehydratase).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:1067Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4369)
Molecular_infoCorresponding_CDSC53B4.7a
C53B4.7b
C53B4.7c
C53B4.7d
C53B4.7e
Corresponding_CDS_historyC53B4.7:wp47
Corresponding_transcriptC53B4.7a.1
C53B4.7b.1
C53B4.7c.1
C53B4.7d.1
C53B4.7e.1
Other_sequence (75)
Associated_featureWBsf646202
WBsf646203
WBsf646204
WBsf646205
WBsf659838
WBsf997329
WBsf997330
WBsf1017907
WBsf228775
Experimental_infoRNAi_result (11)
Expr_pattern (11)
Drives_constructWBCnstr00002197
WBCnstr00037617
Construct_productWBCnstr00013991
WBCnstr00037617
Microarray_results (44)
Expression_cluster (230)
InteractionWBInteraction000038986
WBInteraction000547585
WBInteraction000551697
WBInteraction000574221
WBInteraction000574582
WBInteraction000578560
WBInteraction000582903
WBInteraction000584992
Map_infoMapIVPosition4.00022Error0.000243
PositivePositive_cloneC53B4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point7118
Reference (24)
RemarkData extracted from Marroquin et al. (2000)
MethodGene