WormBase Tree Display for Gene: WBGene00013168

WBGene00013168 SMap: S_parent: Sequence: Y53F4B
  Identity: Version: 2
    Name: CGC_name: arp-1 Person_evidence: WBPerson1562
      Sequence_name: Y53F4B.22
      Molecular_name: Y53F4B.22a
        Y53F4B.22a.1
        CE35675
        Y53F4B.22b
        CE48840
        Y53F4B.22b.1
      Other_name: CELE_Y53F4B.22 Accession_evidence: NDB BX284602
      Public_name: arp-1
    DB_info: Database: AceView gene 2P407
        WormQTL gene WBGene00013168
        SignaLink protein WBGene00013168
        WormFlux gene WBGene00013168
        NDB locus_tag CELE_Y53F4B.22
        Panther gene CAEEL|WormBase=WBGene00013168|UniProtKB=Q9NA98
          family PTHR11937
        NCBI gene 175162
        RefSeq protein NM_064707.7
            NM_001306622.3
        TrEMBL UniProtAcc Q9NA98
            U4PR70
        UniProt_GCRP UniProtAcc Q9NA98
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 14 Nov 2008 16:27:48 WBPerson2970 Event: Acquires_merge: WBGene00000194
      Acquires_merge: WBGene00000194
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: arp
    Allele (56)
    Legacy_information: [C.elegansII] NMK. Sequence predicts protein with 50% homology to actin, 67% to vertebrate actin related protein. Antibody staining suggests located at cell division remnant. [RW]
    Strain: WBStrain00040378
    RNASeq_FPKM (74)
    GO_annotation: 00095869
    Ortholog: WBGene00026067 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00053330 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00193423 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00191811 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137806 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g6233 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7397 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4624 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16958 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g16961 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g17044 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20262 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16871 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9433 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g25487 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22425 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-arp-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold458.g1428 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02299.g25863 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09344 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005577 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02634 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12036 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20313910 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g6659 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00273758 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00291054 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000001171 Saccharomyces cerevisiae From_analysis: OMA
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0011745 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2695 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:168 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:167 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1858964 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1917446 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1307025 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1307380 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (11)
    Structured_description: Automated_description: Part of dynactin complex. Human ortholog(s) of this gene implicated in Down syndrome and colon cancer. Is an ortholog of human ACTR1A (actin related protein 1A). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:219 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:167)
      DOID:14250 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:167)
  Molecular_info: Corresponding_CDS: Y53F4B.22a
      Y53F4B.22b
    Corresponding_CDS_history: Y53F4B.22:wp109
    Corresponding_transcript: Y53F4B.22a.1
      Y53F4B.22b.1
    Other_sequence (63)
    Associated_feature: WBsf644884
      WBsf990898
      WBsf990899
      WBsf990900
      WBsf1013947
      WBsf222537
  Experimental_info: RNAi_result (17)
    Expr_pattern: Expr8526
      Expr1023806
      Expr1035850
      Expr1160714
      Expr2009406
      Expr2027642
    Construct_product: WBCnstr00001390
    Microarray_results (19)
    Expression_cluster (92)
    Interaction (67)
  Map_info: Map: II Position: 24.073 Error: 0.044205
    Positive: Positive_clone: Y53F4B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012379
    WBPaper00014851
    WBPaper00014852
    WBPaper00015103
    WBPaper00022051
    WBPaper00036942
    WBPaper00037699
    WBPaper00038491
    WBPaper00041129
    WBPaper00048493
    WBPaper00052206
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene