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WormBase Tree Display for Gene: WBGene00000182

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Name Class

WBGene00000182SMapS_parentSequenceB0336
IdentityVersion3
NameCGC_namearf-1
Sequence_nameB0336.2
Molecular_nameB0336.2
B0336.2.1
CE00696
B0336.2.2
Other_nameARF/1
arf-1.2
CELE_B0336.2Accession_evidenceNDBBX284603
Public_namearf-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:20WBPerson1971EventImportedInitial conversion from geneace
205 Nov 2004 15:32:14WBPerson2970Name_changeCGC_namearf-1.2
310 Sep 2020 13:24:17WBPerson1983Name_changeCGC_namearf-1
Other_namearf-1.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classarf
Allele (33)
Legacy_information[C.elegansII] NMK. Encodes 181 aa predicted class I ARF. [CGC, MQ]
RNASeq_FPKM (74)
GO_annotation (22)
Contained_in_operonCEOP3332
OrthologWBGene00055607Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00030680Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00094945Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00119857Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00219396Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00224363Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4185Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7263Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1759Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9742Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15135Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17704Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15987Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9961Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g14035Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6465Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00011.g860Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00290.g8609Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_III.g9409Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17423Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00216.g7245Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_24015Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010607Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09576Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15636Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30136110Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7776Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245709Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00261850Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294123Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002351Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
SGD:S000002296Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0010348Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-010724-5Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-030616-356Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040122-4Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040801-176Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
HGNC:652Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
HGNC:654Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
MGI:99431Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
MGI:99595Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
MGI:99432Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
RGD:621270Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
RGD:621271Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
RGD:621273Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
Paralog (14)
Structured_descriptionConcise_descriptionarf-1.2 encodes an ADP-ribosylation factor homolog required in vivo for embryonic development, fertility, locomotion, vulval development, and cuticular synthesis; ARF proteins are N-myristoylated GTPases that regulate membrane traffic and the actin cytoskeleton, and that activate both phospholipase D1 (PLD1) and phosphatidylinositol 4-phosphate 5-kinase.Paper_evidenceWBPaper00012958
WBPaper00013160
WBPaper00015195
Curator_confirmedWBPerson567
Date_last_updated16 Jul 2007 00:00:00
Automated_descriptionPredicted to enable GTP binding activity and GTPase activity. Involved in several processes, including oocyte development; regulation of apoptotic process involved in development; and regulation of receptor-mediated endocytosis. Located in endoplasmic reticulum. Expressed in pharyngeal muscle cell; uterus; ventral nerve cord; and vulval precursor cell. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Is an ortholog of human ARF1 (ADP ribosylation factor 1) and ARF3 (ADP ribosylation factor 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050454Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:652)
Molecular_infoCorresponding_CDSB0336.2
Corresponding_transcriptB0336.2.1
B0336.2.2
Other_sequence (178)
Associated_feature (13)
Experimental_infoRNAi_resultWBRNAi00079565Inferred_automaticallyRNAi_primary
WBRNAi00090606Inferred_automaticallyRNAi_primary
WBRNAi00080007Inferred_automaticallyRNAi_primary
WBRNAi00079703Inferred_automaticallyRNAi_primary
WBRNAi00109355Inferred_automaticallyRNAi_primary
WBRNAi00002442Inferred_automaticallyRNAi_primary
WBRNAi00079795Inferred_automaticallyRNAi_primary
WBRNAi00079657Inferred_automaticallyRNAi_primary
WBRNAi00098332Inferred_automaticallyRNAi_primary
WBRNAi00062565Inferred_automaticallyRNAi_primary
WBRNAi00079611Inferred_automaticallyRNAi_primary
WBRNAi00080008Inferred_automaticallyRNAi_primary
WBRNAi00109452Inferred_automaticallyRNAi_primary
WBRNAi00085364Inferred_automaticallyRNAi_primary
WBRNAi00062560Inferred_automaticallyRNAi_primary
WBRNAi00087059Inferred_automaticallyRNAi_primary
WBRNAi00098428Inferred_automaticallyRNAi_primary
WBRNAi00001184Inferred_automaticallyRNAi_primary
WBRNAi00109549Inferred_automaticallyRNAi_primary
WBRNAi00079978Inferred_automaticallyRNAi_primary
WBRNAi00087057Inferred_automaticallyRNAi_primary
WBRNAi00079749Inferred_automaticallyRNAi_primary
WBRNAi00028094Inferred_automaticallyRNAi_primary
WBRNAi00038944Inferred_automaticallyRNAi_primary
WBRNAi00002820Inferred_automaticallyRNAi_primary
WBRNAi00083356Inferred_automaticallyRNAi_primary
WBRNAi00080493Inferred_automaticallyRNAi_primary
WBRNAi00115381Inferred_automaticallyRNAi_primary
WBRNAi00008295Inferred_automaticallyRNAi_primary
WBRNAi00087061Inferred_automaticallyRNAi_primary
WBRNAi00109258Inferred_automaticallyRNAi_primary
WBRNAi00109160Inferred_automaticallyRNAi_primary
WBRNAi00079519Inferred_automaticallyRNAi_primary
WBRNAi00079473Inferred_automaticallyRNAi_primary
WBRNAi00087060Inferred_automaticallyRNAi_primary
WBRNAi00024381Inferred_automaticallyRNAi_primary
WBRNAi00087207Inferred_automaticallyRNAi_primary
WBRNAi00087058Inferred_automaticallyRNAi_primary
Expr_patternChronogram1686
Expr3149
Expr4834
Expr5055
Expr15679
Expr1028066
Expr1030106
Expr1143124
Expr2009391
Expr2027627
Drives_constructWBCnstr00002999
WBCnstr00011177
WBCnstr00012265
WBCnstr00019869
WBCnstr00037680
WBCnstr00042476
Construct_productWBCnstr00008785
WBCnstr00008786
WBCnstr00019869
WBCnstr00037680
WBCnstr00042476
Microarray_results (26)
Expression_cluster (132)
Interaction (182)
Map_infoMapIIIPosition-1.44726Error0.000356
PositivePositive_cloneB0336Inferred_automaticallyFrom sequence, transcript, pseudogene data
NM#G4
Mapping_dataMulti_point4788
5049
Pseudo_map_position
Reference (37)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
This gene was previously assigned the CGC name arf-1. It has been re-assigned to arf-1.2Curator_confirmedWBPerson2970
MethodGene