WormBase Tree Display for Gene: WBGene00020717

WBGene00020717 SMap: S_parent: Sequence: T23B12
  Identity: Version: 2
    Name: CGC_name: mrpl-4 Person_evidence: WBPerson261
      Sequence_name: T23B12.2
      Molecular_name: T23B12.2
        T23B12.2.1
        CE14028
      Other_name: CELE_T23B12.2 Accession_evidence: NDB BX284605
      Public_name: mrpl-4
    DB_info: Database: AceView gene 5I949
        WormQTL gene WBGene00020717
        WormFlux gene WBGene00020717
        NDB locus_tag CELE_T23B12.2
        Panther gene CAEEL|WormBase=WBGene00020717|UniProtKB=O17005
          family PTHR10746
        NCBI gene 179230
        RefSeq protein NM_072780.7
        TREEFAM TREEFAM_ID TF313913
        TrEMBL UniProtAcc O17005
        UniProt_GCRP UniProtAcc O17005
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrpl-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (27)
    RNASeq_FPKM (74)
    GO_annotation: 00029142
      00029143
      00029144
      00125291
      00125292
      00125293
    Contained_in_operon: CEOP5192
    Ortholog: WBGene00053091 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00024747 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00155126 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00130192 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00148778 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00118510 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00226201 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2161 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13741 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3074 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8830 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g5607 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26204 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1089 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g778 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7378 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g2859 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-mrpl-4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14815 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00220.g7341 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_018852 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03986 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g7130 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50113920 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14992 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245665 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00264010 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293315 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004487 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      FB:FBgn0001995 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050522-388 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:14276 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2137210 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1311777 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Is an ortholog of human MRPL4 (mitochondrial ribosomal protein L4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T23B12.2
    Corresponding_transcript: T23B12.2.1
    Other_sequence: OVC02279_1
      XI03442
      Dviv_isotig17635
      RSC01227_1
      EX501624.1
      GRC02498_1
      Oden_contig19773
      OVC03599_1
      CRC05256_1
      CR09626
      Dviv_isotig17634
      Acan_isotig08247
      HG08035
      CR11098
      BF599163.1
      RS10795
      HGC09894_1
      GO251057.1
      AI438777.1
      ES565491.1
      BMC11493_1
      JI229973.1
      RS10031
      JI170410.1
      TSC07477_1
      BXC00317_1
      DA01496
      Tcol_isotig04977
      Oden_contig19770
      SRC02203_1
      Tcol_isotig04978
      EX008671.1
      Tcir_isotig24266
      HG00886
      HG09976
      SR01903
      HG07966
      HG01024
      BE202352.1
      XIC03037_1
      CR01334
      HGC00792_1
      GR13328
      PPC15980_1
    Associated_feature: WBsf232113
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr1015278
      Expr1039024
      Expr1157430
      Expr2013726
      Expr2031961
    Drives_construct: WBCnstr00024936
    Construct_product: WBCnstr00024936
    Microarray_results (24)
    Expression_cluster (111)
    SAGE_tag: SAGE:cttccagacg Strand: Sense
        Unambiguously_mapped
      SAGE:tagaaccacgttctcgg Strand: Antisense
      SAGE:cttccagacgcagtcag Strand: Sense
        Unambiguously_mapped
      SAGE:tagaaccacg Strand: Antisense
    Interaction (177)
  Map_info: Map: V Position: 1.41861 Error: 0.002123
    Positive: Positive_clone: T23B12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00062388
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene