WormBase Tree Display for Gene: WBGene00017688

WBGene00017688 SMap: S_parent: Sequence: F22A3
  Identity: Version: 2
    Name: CGC_name: ttr-35
      Sequence_name: F22A3.2
      Molecular_name: F22A3.2
        F22A3.2.1
        CE38505
      Other_name: CELE_F22A3.2 Accession_evidence: NDB BX284606
      Public_name: ttr-35
    DB_info: Database: AceView gene XH131
        WormQTL gene WBGene00017688
        WormFlux gene WBGene00017688
        NDB locus_tag CELE_F22A3.2
        Panther gene CAEEL|WormBase=WBGene00017688|UniProtKB=Q19694
          family PTHR21700
        NCBI gene 180925
        RefSeq protein NM_076697.7
        TREEFAM TREEFAM_ID TF315773
        TrEMBL UniProtAcc Q19694
        UniProt_GCRP UniProtAcc Q19694
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Sep 2007 11:48:01 WBPerson2970 Name_change: CGC_name: ttr-35
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    Allele (12)
    RNASeq_FPKM (74)
    GO_annotation: 00065511
      00123010
    Contained_in_operon: CEOPX170
    Ortholog: WBGene00027626 Caenorhabditis briggsae From_analysis: Hillier-set
      WBGene00051485 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00161345 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00095221 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00123802 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00270770 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00269063 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g12111 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6785 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17448 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g2699 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26498 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g282 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19017 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g29022 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g15705 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00071.g3383 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ttr-35 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold626.g6420 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00292.g8815 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_00337 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_024602 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g17018 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0190000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19256 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241920 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00267978 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302774 Trichuris muris From_analysis: WormBase-Compara
    Paralog (62)
    Structured_description: Automated_description: Predicted to be located in cell surface and extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F22A3.2
    Corresponding_CDS_history: F22A3.2:wp142
    Corresponding_transcript: F22A3.2.1
    Other_sequence: EX910397.1
      EX551297.1
      MH10061
      ACC06799_1
      MAC02702_1
      CBC00613_1
      WBC01042_1
      GRC00153_1
      EY462574.1
      CSC00212_1
      Acan_isotig15702
      XIC04447_1
      Name_isotig00699
      FD517221.1
      EX010215.1
      Tcir_isotig28264
      GO251700.1
      Name_isotig00698
      SSC01414_1
      DI02312
      BU087220.1
      Tcol_isotig10128
      MI06871
      HC08037
      JI477213.1
      AW505870.1
      Oden_isotig18270
      HBC03620_1
      NAC01648_1
      MHC07591_1
      GR11019
      SS00453
      HC01738
      HG01976
      MPC00317_1
      DIC01882_1
      ACC14235_1
      BMC07575_1
      CJC15298_1
      MJ05072
      MI07897
      MP01337
      JK314786.1
      MJC04574_1
      AW506331.1
      PPC06226_1
      HCC05122_1
      JI181227.1
      XI05303
      HGC02709_1
      MIC05286_1
      CD455506.1
      GRC03821_1
    Associated_feature: WBsf1005582
      WBsf1005583
      WBsf1023106
      WBsf235843
  Experimental_info: RNAi_result: WBRNAi00045263 Inferred_automatically: RNAi_primary
      WBRNAi00081118 Inferred_automatically: RNAi_primary
      WBRNAi00013720 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017267
      Expr1037593
      Expr1149193
      Expr2017601
      Expr2035740
    Drives_construct: WBCnstr00027100
    Construct_product: WBCnstr00027100
    Microarray_results (19)
    Expression_cluster (152)
    Interaction: WBInteraction000209691
      WBInteraction000330297
      WBInteraction000340674
      WBInteraction000348882
      WBInteraction000383346
      WBInteraction000388379
      WBInteraction000397488
      WBInteraction000433578
      WBInteraction000445478
      WBInteraction000449752
  Map_info: Map: X Position: -2.86882
    Positive: Positive_clone: F22A3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00034662
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene