WormBase Tree Display for Gene: WBGene00016027

WBGene00016027 SMap: S_parent: Sequence: C23H5
  Identity: Version: 1
    Name: Sequence_name: C23H5.8
      Molecular_name (13)
      Other_name: CELE_C23H5.8 Accession_evidence: NDB BX284604
      Public_name: C23H5.8
    DB_info: Database: AceView gene 4C876
        WormQTL gene WBGene00016027
        WormFlux gene WBGene00016027
        NDB locus_tag CELE_C23H5.8
        NCBI gene 177007
        RefSeq protein NM_001307450.4
            NM_001129285.4
            NM_067762.8
            NM_001392263.1
        TREEFAM TREEFAM_ID TF317991
        TrEMBL UniProtAcc H2KYY0
            U4PRA9
            A8WIS5
            H2KYX9
        UniProt_GCRP UniProtAcc H2KYX9
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (40)
    Strain: WBStrain00031540
    RNASeq_FPKM (74)
    Ortholog: WBGene00031918 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00070854 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00141714 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00120502 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00161870 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      CBOVI.g8799 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2058 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7048 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g22173 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22270 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g4553 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5321 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1024 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g17290 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g192 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00025.g1538 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-C23H5.8 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10545 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02642.g27363 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17431 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016128 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_016129 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08096 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g16604 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g2206 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40034500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9767 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00257337 Strongyloides ratti From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in AFD; OLL; PVD; and intestine based on tiling array; RNA-seq; single-cell RNA-seq; proteomic; and microarray studies. Is affected by several genes including daf-16; skn-1; and dpy-10 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-nine chemicals including methylmercury hydroxide; methylmercuric chloride; and rotenone based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C23H5.8a
      C23H5.8b
      C23H5.8c
      C23H5.8d
    Corresponding_transcript: C23H5.8a.1
      C23H5.8b.1
      C23H5.8b.2
      C23H5.8c.1
      C23H5.8d.1
    Other_sequence: FD515016.1
      EX543914.1
      CR08933
      TX01445
      ACC13539_1
      Hbac_isotig04964
      TX01707
      Name_isotig01959
      CR08932
      EX557632.1
      CSC02377_1
      NAC00144_1
      Acan_isotig13087
      JI241976.1
      ES740709.1
      GT571514.1
    Associated_feature: WBsf651665
      WBsf995624
      WBsf229790
      WBsf229791
      WBsf229792
  Experimental_info: RNAi_result: WBRNAi00011069 Inferred_automatically: RNAi_primary
      WBRNAi00041038 Inferred_automatically: RNAi_primary
      WBRNAi00001315 Inferred_automatically: RNAi_primary
      WBRNAi00029123 Inferred_automatically: RNAi_primary
      WBRNAi00106982 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023370
      Expr1036849
      Expr1145078
      Expr2001026
      Expr2019244
    Microarray_results (37)
    Expression_cluster (295)
    Interaction: WBInteraction000032384
  Map_info: Positive: Positive_clone: C23H5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV -10.9465
  Reference: WBPaper00033444
  Method: Gene