WormBase Tree Display for Gene: WBGene00012853

WBGene00012853 SMap: S_parent: Sequence: Y44A6D
  Identity: Version: 2
    Name: CGC_name: tpan-1 Person_evidence: WBPerson260
      Sequence_name: Y44A6D.2
      Molecular_name: Y44A6D.2
        Y44A6D.2.1
        CE19160
      Other_name: CELE_Y44A6D.2 Accession_evidence: NDB BX284605
      Public_name: tpan-1
    DB_info: Database: AceView gene 5V259
        WormQTL gene WBGene00012853
        WormFlux gene WBGene00012853
        NDB locus_tag CELE_Y44A6D.2
        NCBI gene 180360
        RefSeq protein NM_075610.6
        TREEFAM TREEFAM_ID TF319510
        TrEMBL UniProtAcc Q9XXE2
        UniProt_GCRP UniProtAcc Q9XXE2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 16 Feb 2022 12:47:28 WBPerson51134 Name_change: CGC_name: tpan-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tpan
    Allele (33)
    Strain: WBStrain00051866
    RNASeq_FPKM (74)
    Ortholog: WBGene00063548 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00027970 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00143653 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00138264 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00102114 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      CBOVI.g124 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7584 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13540 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7252 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1214 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2226 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9962 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7519 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g21914 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g3836 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00037.g2065 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y44A6D.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21812 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_19858 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_021934 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_50399500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g18167 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in head mesodermal cell; intestine; neurons; and retrovesicular ganglion based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and eat-2 based on proteomic; microarray; and RNA-seq studies. Is affected by sixteen chemicals including rotenone; sesamin; and iron oxide nanoparticle based on RNA-seq; microarray; and proteomic studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y44A6D.2
    Corresponding_transcript: Y44A6D.2.1
    Other_sequence: TDC02072_1
      Hbac_isotig05826
      CR05612
      Acan_isotig02619
      FD515457.1
      BU086750.1
      AE00438
      Dviv_isotig29586
      CBC03857_1
      HBC06122_1
      FD515458.1
      CB036302.1
      EX827933.1
      BU087389.1
      FG971207.1
      CSC00717_1
      HCC10213_1
      ES743458.1
      AYC02465_1
      HBC11788_1
      ACC02300_1
      NAC01427_1
      HC08380
      Oden_isotig24688
      EX827681.1
      CRC00016_1
      EX014192.1
    Associated_feature: WBsf647764
      WBsf1003647
      WBsf1022015
  Experimental_info: RNAi_result: WBRNAi00000858 Inferred_automatically: RNAi_primary
      WBRNAi00020580 Inferred_automatically: RNAi_primary
      WBRNAi00056549 Inferred_automatically: RNAi_primary
      WBRNAi00037073 Inferred_automatically: RNAi_primary
      WBRNAi00002038 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019748
      Expr1160022
      Expr2007529
      Expr2025766
    Drives_construct: WBCnstr00029815
    Construct_product: WBCnstr00029815
    Microarray_results (19)
    Expression_cluster (275)
    Interaction: WBInteraction000376125
      WBInteraction000383303
      WBInteraction000389067
      WBInteraction000428253
      WBInteraction000580835
      WBInteraction000583623
      WBInteraction000583994
  Map_info: Map: V Position: 25.2229
    Positive: Positive_clone: Y44A6D Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00040135
    WBPaper00062568
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene