WormBase Tree Display for Gene: WBGene00011891

WBGene00011891 SMap: S_parent: Sequence: T21C9
  Identity: Version: 2
    Name: CGC_name: del-6 Person_evidence: WBPerson260
            WBPerson145
      Sequence_name: T21C9.3
      Molecular_name: T21C9.3a
        T21C9.3a.1
        CE43799
        T21C9.3b
        CE43784
        T21C9.3a.2
        T21C9.3a.3
        T21C9.3b.1
      Other_name: CELE_T21C9.3 Accession_evidence: NDB BX284605
      Public_name: del-6
    DB_info: Database: AceView gene 5L55
        WormQTL gene WBGene00011891
        WormFlux gene WBGene00011891
        NDB locus_tag CELE_T21C9.3
        Panther gene CAEEL|WormBase=WBGene00011891|UniProtKB=Q8MPW0
          family PTHR11690
        NCBI gene 179474
        RefSeq protein NM_001380748.1
            NM_171534.9
        TREEFAM TREEFAM_ID TF325327
        TrEMBL UniProtAcc Q8MPW0
            Q8MPW1
        UniProt_GCRP UniProtAcc Q8MPW0
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 24 Feb 2012 15:34:46 WBPerson2970 Name_change: CGC_name: del-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: del
    Allele (36)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00031202 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00159252 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00142533 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00124721 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00065039 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00226145 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g954 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4548 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g304 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4443 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17982 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g744 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g489 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4624 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8704 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1494 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_08931.g21787 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-del-6 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15522 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00522.g12423 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11792 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016441 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07253 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g3840 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g6565 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50295100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15556 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00107628 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00255855 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog (26)
    Structured_description: Automated_description: Predicted to enable ligand-gated sodium channel activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T21C9.3a
      T21C9.3b
    Corresponding_CDS_history (2)
    Corresponding_transcript: T21C9.3a.1
      T21C9.3a.2
      T21C9.3a.3
      T21C9.3b.1
    Corresponding_pseudogene_history: T21C9.3:wp82
    Other_sequence: Tcol_isotig04180
      MJ04933
      CR08407
      FD515741.1
      CRC11672_1
      SRC01072_1
      SSC00117_1
      DA05184
      CR09031
      Dviv_isotig17130
      JI171843.1
      SS01443
      GR978820.1
      CSC00811_1
      AE03751
      CR03546
      SC00421
      AYC02506_1
      Hbac_isotig01787
      CJC02270_1
      Tcir_isotig20750
      GR367569.1
      Oden_isotig17721
      Oden_isotig23339
      SR02303
      CRC11785_1
      CR09032
      SSC06543_1
      Acan_isotig08056
      CRC02023_1
      DAC02619_1
      Dviv_isotig17131
      FC816773.1
    Associated_feature: WBsf1001142
      WBsf232396
      WBsf232397
  Experimental_info: RNAi_result: WBRNAi00065616 Inferred_automatically: RNAi_primary
      WBRNAi00035752 Inferred_automatically: RNAi_primary
      WBRNAi00061891 Inferred_automatically: RNAi_primary
      WBRNAi00053719 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018110
      Expr1035242
      Expr1157269
      Expr2010852
      Expr2029090
    Drives_construct: WBCnstr00030307
    Construct_product: WBCnstr00030307
    Microarray_results (24)
    Expression_cluster (180)
    Interaction: WBInteraction000540406
      WBInteraction000583296
  Map_info: Map: V Position: 2.60085
    Positive: Positive_clone: T21C9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00064563
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene