WormBase Tree Display for Gene: WBGene00020453
expand all nodes | collapse all nodes | view schema
WBGene00020453 | SMap | S_parent | Sequence | CHROMOSOME_III | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | fbxa-55 | Person_evidence | WBPerson655 | |||
Sequence_name | T12B5.6 | ||||||
Molecular_name | T12B5.6b | ||||||
T12B5.6a | |||||||
CE39403 | |||||||
T12B5.6c | |||||||
CE51680 | |||||||
T12B5.6b.1 | |||||||
T12B5.6c.1 | |||||||
Other_name | CELE_T12B5.6 | Accession_evidence | NDB | BX284603 | |||
Public_name | fbxa-55 | ||||||
DB_info | Database | WormQTL | gene | WBGene00020453 | |||
WormFlux | gene | WBGene00020453 | |||||
NDB | locus_tag | CELE_T12B5.6 | |||||
Panther | gene | CAEEL|WormBase=WBGene00020453|UniProtKB=Q2WF55 | |||||
family | PTHR23015 | ||||||
NCBI | gene | 188445 | |||||
RefSeq | protein | NM_001047409.4 | |||||
NM_001330938.4 | |||||||
NR_138510.1 | |||||||
TREEFAM | TREEFAM_ID | TF322360 | |||||
TrEMBL | UniProtAcc | A0A163VTZ6 | |||||
Q2WF55 | |||||||
UniProt_GCRP | UniProtAcc | Q2WF55 | |||||
RNAcentral | URSid | URS00009E1D4F | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (125) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (25) | |||||||
Paralog (222) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in AFD; ASER; and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including rotenone; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T12B5.6b | |||||
T12B5.6c | |||||||
Corresponding_CDS_history | T12B5.6:wp151 | ||||||
T12B5.6a:wp253 | |||||||
Corresponding_transcript (3) | |||||||
Other_sequence | Oden_isotig22831 | ||||||
Associated_feature | WBsf991189 | ||||||
WBsf1014150 | |||||||
Experimental_info | RNAi_result | WBRNAi00035506 | Inferred_automatically | RNAi_primary | |||
WBRNAi00018634 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053190 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006619 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1156782 | ||||||
Expr2011557 | |||||||
Expr2029795 | |||||||
Drives_construct | WBCnstr00025127 | ||||||
Construct_product | WBCnstr00025127 | ||||||
Microarray_results | SMD_T12B5.6 | ||||||
172594_x_at | |||||||
189885_at | |||||||
A_12_P118613 | |||||||
Aff_T12B5.6 | |||||||
GPL13394_WBGene00020453 | |||||||
GPL13914_T12B5.6 | |||||||
GPL19516_CGZ0034816 | |||||||
GPL19516_CGZ0034817 | |||||||
GPL21109_T12B5.6b | |||||||
GPL3518_CE20064 | |||||||
GPL8304_CE_WBGene00020453_A | |||||||
GPL8673_T12B5_6aP00053 | |||||||
GPL8673_T12B5_6aP00054 | |||||||
GPL8673_T12B5_6aP00056 | |||||||
GPL8673_T12B5_6bP00604 | |||||||
GPL8673_T12B5_6bP00608 | |||||||
GPL8673_T12B5_6bP00610 | |||||||
GPL9450_T12B5.6 | |||||||
cea2.p.158402 | |||||||
Expression_cluster (127) | |||||||
Interaction (27) | |||||||
Map_info | Map | III | Position | -25.0866 | Error | 0.003123 | |
Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |