WormBase Tree Display for Gene: WBGene00017998
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| WBGene00017998 | SMap | S_parent | Sequence | F33D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F33D4.6 | |||||||
| Molecular_name | F33D4.6a | ||||||||
| F33D4.6a.1 | |||||||||
| CE33634 | |||||||||
| F33D4.6b | |||||||||
| CE37228 | |||||||||
| F33D4.6c | |||||||||
| CE17037 | |||||||||
| F33D4.6b.1 | |||||||||
| F33D4.6c.1 | |||||||||
| Other_name | CELE_F33D4.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | F33D4.6 | ||||||||
| DB_info | Database | AceView | gene | 4I480 | |||||
| WormQTL | gene | WBGene00017998 | |||||||
| WormFlux | gene | WBGene00017998 | |||||||
| NDB | locus_tag | CELE_F33D4.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017998|UniProtKB=W6RRY4 | |||||||
| family | PTHR37435 | ||||||||
| NCBI | gene | 177552 | |||||||
| RefSeq | protein | NM_001307241.3 | |||||||
| NM_068860.2 | |||||||||
| NM_068859.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF320147 | |||||||
| TrEMBL | UniProtAcc | O44189 | |||||||
| W6RRY4 | |||||||||
| H2KYK9 | |||||||||
| UniProt_GCRP | UniProtAcc | W6RRY4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (47) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (21) | |||||||||
| Paralog | WBGene00001068 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00008511 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017307 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017420 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00021326 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in several structures, including CEP socket cell; arc ant V; germline precursor cell; hypodermis; and mechanosensory neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by twenty-eight chemicals including Ethanol; Nitric Oxide; and methylmercury hydroxide based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F33D4.6a | |||||||
| F33D4.6b | |||||||||
| F33D4.6c | |||||||||
| Corresponding_CDS_history | F33D4.6a:wp96 | ||||||||
| F33D4.6b:wp129 | |||||||||
| Corresponding_transcript | F33D4.6a.1 | ||||||||
| F33D4.6b.1 | |||||||||
| F33D4.6c.1 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf668047 | ||||||||
| WBsf997039 | |||||||||
| WBsf997040 | |||||||||
| WBsf1017758 | |||||||||
| WBsf230313 | |||||||||
| WBsf230314 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr1016508 | ||||||||
| Expr1037752 | |||||||||
| Expr1150094 | |||||||||
| Expr2003256 | |||||||||
| Expr2021470 | |||||||||
| Drives_construct | WBCnstr00026853 | ||||||||
| Construct_product | WBCnstr00026853 | ||||||||
| Microarray_results | SMD_F33D4.1 | ||||||||
| SMD_F33D4.6 | |||||||||
| 174212_at | |||||||||
| 185424_s_at | |||||||||
| 185764_s_at | |||||||||
| A_12_P103489 | |||||||||
| A_12_P108022 | |||||||||
| Aff_F33D4.6A | |||||||||
| Aff_F33D4.6B | |||||||||
| GPL13394_WBGene00017998 | |||||||||
| GPL13914_F33D4.6 | |||||||||
| GPL14144_F33D4.6b_1270-1329_0.903_28_C | |||||||||
| GPL14144_F33D4.6b_1826-1885_0.947_5_B | |||||||||
| GPL14144_F33D4.6b_1882-1941_0.960_1_A | |||||||||
| GPL19516_CGZ0019465 | |||||||||
| GPL19516_CGZ0019466 | |||||||||
| GPL21109_F33D4.6a | |||||||||
| GPL21109_F33D4.6b | |||||||||
| GPL3518_CE17036 | |||||||||
| GPL3518_CE17037 | |||||||||
| GPL8304_CE_WBGene00017998_A | |||||||||
| GPL8673_F33D4_6aP00143 | |||||||||
| GPL8673_F33D4_6aP00650 | |||||||||
| GPL8673_F33D4_6aP00836 | |||||||||
| GPL8673_F33D4_6bP01254 | |||||||||
| GPL8673_F33D4_6bP01413 | |||||||||
| GPL8673_F33D4_6bP01849 | |||||||||
| GPL9450_F33D4.6b | |||||||||
| cea2.p.91835 | |||||||||
| Expression_cluster (278) | |||||||||
| Interaction | WBInteraction000030403 | ||||||||
| WBInteraction000032453 | |||||||||
| WBInteraction000553059 | |||||||||
| WBInteraction000568636 | |||||||||
| Map_info | Positive | Positive_clone | F33D4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 3.44277 | |||||||
| Reference | WBPaper00064942 | ||||||||
| Method | Gene |
