WormBase Tree Display for Gene: WBGene00017900
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WBGene00017900 | SMap | S_parent | Sequence | F28E10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F28E10.1 | |||||||
Molecular_name (30) | |||||||||
Other_name | CELE_F28E10.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | F28E10.1 | ||||||||
DB_info | Database | AceView | gene | 4F353 | |||||
WormQTL | gene | WBGene00017900 | |||||||
WormFlux | gene | WBGene00017900 | |||||||
NDB | locus_tag | CELE_F28E10.1 | |||||||
NCBI | gene | 177223 | |||||||
RefSeq | protein | NM_001380201.1 | |||||||
NM_001307314.3 | |||||||||
NM_001307315.4 | |||||||||
NM_001027982.5 | |||||||||
NM_001380199.1 | |||||||||
NM_001027983.4 | |||||||||
NM_001380200.1 | |||||||||
NM_001268335.4 | |||||||||
NM_001027981.6 | |||||||||
NM_001027984.5 | |||||||||
TREEFAM | TREEFAM_ID | TF344064 | |||||||
TrEMBL | UniProtAcc | H2KZT7 | |||||||
H2KZT6 | |||||||||
H2KZT8 | |||||||||
D7SFK5 | |||||||||
U4PQQ4 | |||||||||
U4PDU4 | |||||||||
U4PAK4 | |||||||||
U4PLE4 | |||||||||
U4PAZ0 | |||||||||
D7SFK7 | |||||||||
UniProt_GCRP | UniProtAcc | U4PAK4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (308) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (25) | |||||||||
Structured_description | Automated_description | Enriched in XXX cell; head mesodermal cell; neurons; retrovesicular ganglion; and ventral nerve cord based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F28E10.1a | |||||||
F28E10.1b | |||||||||
F28E10.1c | |||||||||
F28E10.1d | |||||||||
F28E10.1e | |||||||||
F28E10.1f | |||||||||
F28E10.1g | |||||||||
F28E10.1h | |||||||||
F28E10.1i | |||||||||
F28E10.1j | |||||||||
Corresponding_CDS_history | F28E10.1a:wp134 | ||||||||
Corresponding_transcript | F28E10.1a.1 | ||||||||
F28E10.1b.1 | |||||||||
F28E10.1c.1 | |||||||||
F28E10.1d.1 | |||||||||
F28E10.1e.1 | |||||||||
F28E10.1f.1 | |||||||||
F28E10.1g.1 | |||||||||
F28E10.1h.1 | |||||||||
F28E10.1i.1 | |||||||||
F28E10.1j.1 | |||||||||
Other_sequence (11) | |||||||||
Associated_feature (34) | |||||||||
Experimental_info | RNAi_result | WBRNAi00000529 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014052 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00045838 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031532 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (5) | |||||||||
Microarray_results | SMD_F28E10.1 | ||||||||
184725_at | |||||||||
A_12_P101062 | |||||||||
A_12_P118536 | |||||||||
A_12_P149265 | |||||||||
A_12_P175367 | |||||||||
A_12_P175368 | |||||||||
A_12_P175369 | |||||||||
A_12_P175370 | |||||||||
A_12_P175371 | |||||||||
Aff_F28E10.1 | |||||||||
GPL13394_WBGene00017900 | |||||||||
GPL13914_F28E10.1 | |||||||||
GPL14144_F28E10.1a_2293-2352_0.878_24_C | |||||||||
GPL14144_F28E10.1a_2428-2487_0.892_18_B | |||||||||
GPL14144_F28E10.1a_2549-2608_0.904_7_A | |||||||||
GPL19516_CGZ0018721 | |||||||||
GPL19516_CGZ0018722 | |||||||||
GPL19516_CGZ0018723 | |||||||||
GPL19516_CGZ0018724 | |||||||||
GPL19516_CGZ0018725 | |||||||||
GPL19516_CGZ0018726 | |||||||||
GPL19516_CGZ0018727 | |||||||||
GPL19516_CGZ0018728 | |||||||||
GPL19516_CGZ0018729 | |||||||||
GPL19516_CGZ0018730 | |||||||||
GPL21109_F28E10.1a | |||||||||
GPL3518_CE28224 | |||||||||
GPL8304_CE_WBGene00017900_A | |||||||||
GPL8304_CE_WBGene00017900_B | |||||||||
GPL8673_F28E10_1aP02114 | |||||||||
GPL8673_F28E10_1aP02836 | |||||||||
GPL8673_F28E10_1aP02914 | |||||||||
GPL8673_F28E10_1bP01077 | |||||||||
GPL8673_F28E10_1bP01688 | |||||||||
GPL8673_F28E10_1bP01998 | |||||||||
GPL8673_F28E10_1cP01365 | |||||||||
GPL8673_F28E10_1cP01976 | |||||||||
GPL8673_F28E10_1cP02286 | |||||||||
GPL8673_F28E10_1dP00062 | |||||||||
GPL8673_F28E10_1dP00784 | |||||||||
GPL8673_F28E10_1dP00862 | |||||||||
GPL9450_F28E10.1 | |||||||||
cea2.p.91413 | |||||||||
Expression_cluster (201) | |||||||||
Interaction | WBInteraction000030957 | ||||||||
WBInteraction000364704 | |||||||||
Map_info | Positive | Positive_clone | F28E10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | IV | 0.470151 | |||||||
Reference | WBPaper00012571 | ||||||||
WBPaper00026601 | |||||||||
WBPaper00031852 | |||||||||
Method | Gene |