WormBase Tree Display for Gene: WBGene00017304
expand all nodes | collapse all nodes | view schema
| WBGene00017304 | SMap | S_parent | Sequence | F09F7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nmad-1 | |||||||
| Sequence_name | F09F7.7 | ||||||||
| Molecular_name | F09F7.7a | ||||||||
| F09F7.7a.1 | |||||||||
| CE30655 | |||||||||
| F09F7.7b | |||||||||
| CE30656 | |||||||||
| F09F7.7b.1 | |||||||||
| Other_name | CELE_F09F7.7 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | nmad-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 15 Mar 2018 12:23:35 | WBPerson1983 | Name_change | CGC_name | nmad-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nmad | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00037403 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Enables oxidative DNA demethylase activity. Involved in several processes, including meiotic chromosome condensation; positive regulation of double-strand break repair; and positive regulation of reproductive process. Predicted to be located in nucleus. Expressed in muscle cell. Is an ortholog of human ALKBH4 (alkB homolog 4, lysine demethylase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F09F7.7a | |||||||
| F09F7.7b | |||||||||
| Corresponding_transcript | F09F7.7a.1 | ||||||||
| F09F7.7b.1 | |||||||||
| Other_sequence (42) | |||||||||
| Associated_feature | WBsf651053 | ||||||||
| WBsf651054 | |||||||||
| WBsf981481 | |||||||||
| WBsf226695 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000792 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005260 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111927 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082381 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030723 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013003 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044164 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5704 | ||||||||
| Expr10729 | |||||||||
| Expr1018326 | |||||||||
| Expr1037438 | |||||||||
| Expr1148126 | |||||||||
| Expr2002356 | |||||||||
| Expr2020574 | |||||||||
| Drives_construct | WBCnstr00004168 | ||||||||
| WBCnstr00027406 | |||||||||
| Construct_product | WBCnstr00027406 | ||||||||
| Regulate_expr_cluster (5) | |||||||||
| Microarray_results | SMD_F09F7.7 | ||||||||
| 173490_s_at | |||||||||
| A_12_P113646 | |||||||||
| A_12_P156465 | |||||||||
| A_12_P156466 | |||||||||
| A_12_P156467 | |||||||||
| Aff_F09F7.7 | |||||||||
| GPL13394_WBGene00017304 | |||||||||
| GPL13914_F09F7.7 | |||||||||
| GPL14144_F09F7.7a_410-469_0.943_1_A | |||||||||
| GPL14144_F09F7.7a_526-585_0.923_4_C | |||||||||
| GPL14144_F09F7.7a_820-879_0.916_8_B | |||||||||
| GPL19516_CGZ0015198 | |||||||||
| GPL19516_CGZ0015199 | |||||||||
| GPL21109_F09F7.7a | |||||||||
| GPL21109_F09F7.7b | |||||||||
| GPL3518_CE30655 | |||||||||
| GPL8304_CE_WBGene00017304_A | |||||||||
| GPL8673_F09F7_7aP00633 | |||||||||
| GPL8673_F09F7_7aP00693 | |||||||||
| GPL8673_F09F7_7aP00735 | |||||||||
| GPL8673_F09F7_7bP00080 | |||||||||
| GPL8673_F09F7_7bP00186 | |||||||||
| GPL8673_F09F7_7bP00399 | |||||||||
| GPL9450_F09F7.7a | |||||||||
| cea2.d.19480 | |||||||||
| Expression_cluster (187) | |||||||||
| Interaction (284) | |||||||||
| Map_info | Map | III | Position | -1.54934 | |||||
| Positive | Positive_clone | F09F7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00046746 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056997 | |||||||||
| WBPaper00064973 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
