WormBase Tree Display for Gene: WBGene00016415
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| WBGene00016415 | SMap | S_parent | Sequence | C34F11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ampd-1 | Person_evidence | WBPerson10610 | |||||
| Sequence_name | C34F11.3 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_C34F11.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ampd-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 27 Jun 2014 15:53:55 | WBPerson2970 | Name_change | CGC_name | ampd-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ampd | ||||||||
| Allele (78) | |||||||||
| Strain | WBStrain00051109 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (49) | |||||||||
| Structured_description | Automated_description | Predicted to enable AMP deaminase activity. Predicted to be involved in AMP metabolic process and IMP biosynthetic process. Predicted to be located in cytosol. Human ortholog(s) of this gene implicated in several diseases, including congestive heart failure; hereditary spastic paraplegia 63; and pontocerebellar hypoplasia type 9. Is an ortholog of human AMPD2 (adenosine monophosphate deaminase 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:6000 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:468) | ||||
| DOID:0060278 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:469) | ||||||
| DOID:0110814 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:469) | ||||||
| DOID:3393 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:468) | ||||||
| Molecular_info | Corresponding_CDS (4) | ||||||||
| Corresponding_CDS_history | C34F11.3a:wp88 | ||||||||
| C34F11.3a:wp214 | |||||||||
| C34F11.3b:wp88 | |||||||||
| C34F11.3b:wp214 | |||||||||
| C34F11.3c:wp214 | |||||||||
| Corresponding_transcript | C34F11.3a.1 | ||||||||
| C34F11.3b.1 | |||||||||
| C34F11.3c.1 | |||||||||
| C34F11.3d.1 | |||||||||
| Other_sequence (78) | |||||||||
| Associated_feature | WBsf644169 | ||||||||
| WBsf654864 | |||||||||
| WBsf716685 | |||||||||
| WBsf987815 | |||||||||
| WBsf987816 | |||||||||
| WBsf987817 | |||||||||
| WBsf1012193 | |||||||||
| WBsf1012194 | |||||||||
| WBsf221244 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041909 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076196 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041910 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011616 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024736 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027209 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram508 | ||||||||
| Expr5422 | |||||||||
| Expr5423 | |||||||||
| Expr1011813 | |||||||||
| Expr1037035 | |||||||||
| Expr1145917 | |||||||||
| Expr2009323 | |||||||||
| Expr2027559 | |||||||||
| Drives_construct | WBCnstr00003972 | ||||||||
| WBCnstr00003973 | |||||||||
| WBCnstr00028087 | |||||||||
| Construct_product | WBCnstr00028087 | ||||||||
| Microarray_results | SMD_C34F11.3 | ||||||||
| 172978_s_at | |||||||||
| 189114_at | |||||||||
| A_12_P115864 | |||||||||
| A_12_P120068 | |||||||||
| A_12_P171648 | |||||||||
| A_12_P171652 | |||||||||
| A_12_P171653 | |||||||||
| A_12_P171657 | |||||||||
| Aff_C34F11.3 | |||||||||
| GPL13394_WBGene00016415 | |||||||||
| GPL13914_C34F11.3 | |||||||||
| GPL14144_C34F11.3c_2220-2279_0.961_1_A | |||||||||
| GPL14144_C34F11.3c_2291-2350_0.944_2_C | |||||||||
| GPL14144_C34F11.3c_2386-2445_0.944_3_B | |||||||||
| GPL19516_CGZ0007550 | |||||||||
| GPL19516_CGZ0007551 | |||||||||
| GPL19516_CGZ0007552 | |||||||||
| GPL21109_C34F11.3a | |||||||||
| GPL21109_C34F11.3c | |||||||||
| GPL3518_CE32317 | |||||||||
| GPL3518_CE32318 | |||||||||
| GPL8304_CE_WBGene00016415_A | |||||||||
| GPL8304_CE_WBGene00016415_B | |||||||||
| GPL8304_CE_WBGene00016415_C | |||||||||
| GPL8673_C34F11_3aP01294 | |||||||||
| GPL8673_C34F11_3aP01624 | |||||||||
| GPL8673_C34F11_3aP02141 | |||||||||
| GPL8673_C34F11_3bP01366 | |||||||||
| GPL8673_C34F11_3bP01696 | |||||||||
| GPL8673_C34F11_3bP02213 | |||||||||
| GPL8673_C34F11_3cP01483 | |||||||||
| GPL8673_C34F11_3cP01813 | |||||||||
| GPL8673_C34F11_3cP02330 | |||||||||
| GPL9450_C34F11.3a | |||||||||
| GPL9450_C34F11.3b | |||||||||
| cea2.d.15418 | |||||||||
| cea2.d.15443 | |||||||||
| cea2.p.32426 | |||||||||
| Expression_cluster (202) | |||||||||
| Interaction (28) | |||||||||
| Map_info | Map | II | Position | -1.9316 | |||||
| Positive | Positive_clone | C34F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057506 | |||||||||
| WBPaper00058130 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
