WormBase Tree Display for Gene: WBGene00016162
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WBGene00016162 | SMap | S_parent | Sequence | C27D6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | crh-2 | Person_evidence | WBPerson625 | |||||
WBPerson567 | |||||||||
WBPerson2812 | |||||||||
Sequence_name | C27D6.4 | ||||||||
Molecular_name (12) | |||||||||
Other_name | CELE_C27D6.4 | Accession_evidence | NDB | BX284602 | |||||
Public_name | crh-2 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 26 Apr 2011 16:30:24 | WBPerson2970 | Name_change | CGC_name | crh-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | crh | ||||||||
Allele (122) | |||||||||
Strain | WBStrain00002482 | ||||||||
WBStrain00003552 | |||||||||
WBStrain00037697 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00000222 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00000793 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00002783 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Involved in defense response to Gram-negative bacterium; positive regulation of dauer entry; and regulation of gene expression. Predicted to be located in nucleus. Expressed in body wall musculature; seam cell; spermatheca; and tail. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 16; prostate adenocarcinoma; and prostate carcinoma in situ. Is an ortholog of human CREB3L1 (cAMP responsive element binding protein 3 like 1) and CREB3L2 (cAMP responsive element binding protein 3 like 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0110345 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18856) | ||||
DOID:8634 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18854) | ||||||
DOID:2526 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18854) | ||||||
Molecular_info | Corresponding_CDS | C27D6.4a | |||||||
C27D6.4b | |||||||||
C27D6.4c | |||||||||
C27D6.4d | |||||||||
Corresponding_CDS_history | C27D6.4a:wp88 | ||||||||
C27D6.4b:wp88 | |||||||||
C27D6.4c:wp88 | |||||||||
C27D6.4c:wp238 | |||||||||
Corresponding_transcript | C27D6.4a.1 | ||||||||
C27D6.4b.1 | |||||||||
C27D6.4c.1 | |||||||||
C27D6.4d.1 | |||||||||
Other_sequence (13) | |||||||||
Associated_feature (22) | |||||||||
Gene_product_binds (376) | |||||||||
Transcription_factor | WBTranscriptionFactor000319 | ||||||||
Experimental_info | RNAi_result | WBRNAi00011256 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011620 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092881 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041346 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011257 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041345 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092155 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090568 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (13) | |||||||||
Drives_construct | WBCnstr00003072 | ||||||||
WBCnstr00004526 | |||||||||
WBCnstr00004531 | |||||||||
WBCnstr00028283 | |||||||||
Construct_product | WBCnstr00016813 | ||||||||
WBCnstr00017350 | |||||||||
WBCnstr00028283 | |||||||||
Microarray_results | SMD_C27D6.4 | ||||||||
SMD_C27D6.5 | |||||||||
SMD_C34F11.7 | |||||||||
174963_at | |||||||||
176715_at | |||||||||
187831_at | |||||||||
188956_at | |||||||||
A_12_P102005 | |||||||||
A_12_P137885 | |||||||||
A_12_P138875 | |||||||||
Aff_C27D6.4 | |||||||||
Aff_C27D6.5 | |||||||||
Aff_C34F11.7 | |||||||||
GPL13394_WBGene00016162 | |||||||||
GPL13914_C27D6.4 | |||||||||
GPL14144_C27D6.4b_596-655_0.926_10_C | |||||||||
GPL14144_C27D6.4b_701-760_0.936_4_B | |||||||||
GPL14144_C27D6.4b_844-903_0.956_1_A | |||||||||
GPL19516_CGZ0006258 | |||||||||
GPL19516_CGZ0006259 | |||||||||
GPL19516_CGZ0006260 | |||||||||
GPL19516_CGZ0006261 | |||||||||
GPL21109_C27D6.4a | |||||||||
GPL21109_C27D6.4b | |||||||||
GPL3518_CE32146 | |||||||||
GPL3518_CE32148 | |||||||||
GPL8304_CE_WBGene00016162_A | |||||||||
GPL8304_CE_WBGene00016162_C | |||||||||
GPL8673_C27D6_4aP00064 | |||||||||
GPL8673_C27D6_4aP00090 | |||||||||
GPL8673_C27D6_4aP00215 | |||||||||
GPL8673_C27D6_4bP00047 | |||||||||
GPL8673_C27D6_4bP00059 | |||||||||
GPL8673_C27D6_4bP00276 | |||||||||
GPL8673_C27D6_4cP00168 | |||||||||
GPL9450_C27D6.4a | |||||||||
GPL9450_C27D6.4b | |||||||||
cea2.3.04279 | |||||||||
cea2.3.04288 | |||||||||
cea2.3.04306 | |||||||||
cea2.3.04312 | |||||||||
cea2.d.00940 | |||||||||
cea2.d.00941 | |||||||||
Expression_cluster (97) | |||||||||
Interaction (35) | |||||||||
Map_info | Map | II | Position | -1.94895 | Error | 0.002445 | |||
Positive | Positive_clone | C27D6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (10) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |