WormBase Tree Display for Gene: WBGene00013140
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WBGene00013140 | SMap | S_parent | Sequence | Y53C12A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | mop-25.2 | Person_evidence | WBPerson3760 | |||||
WBPerson75 | |||||||||
Sequence_name | Y53C12A.4 | ||||||||
Molecular_name | Y53C12A.4 | ||||||||
Y53C12A.4.1 | |||||||||
CE14890 | |||||||||
Other_name | lss-18 | Paper_evidence | WBPaper00024980 | ||||||
Person_evidence | WBPerson599 | ||||||||
CELE_Y53C12A.4 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | mop-25.2 | ||||||||
DB_info | Database | AceView | gene | 2J992 | |||||
WormQTL | gene | WBGene00013140 | |||||||
WormFlux | gene | WBGene00013140 | |||||||
NDB | locus_tag | CELE_Y53C12A.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00013140|UniProtKB=O18211 | |||||||
family | PTHR10182 | ||||||||
NCBI | gene | 174527 | |||||||
RefSeq | protein | NM_063691.6 | |||||||
SwissProt | UniProtAcc | O18211 | |||||||
TREEFAM | TREEFAM_ID | TF314910 | |||||||
UniProt_GCRP | UniProtAcc | O18211 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 16 Feb 2007 14:39:36 | WBPerson2970 | Name_change | CGC_name | lss-18 | ||||
3 | 09 Mar 2007 14:55:52 | WBPerson2970 | Name_change | CGC_name | mop-25.2 | ||||
Other_name | lss-18 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | mop | ||||||||
Allele (40) | |||||||||
Strain | WBStrain00036879 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00031666 | ||||||||
00031667 | |||||||||
00031668 | |||||||||
00031669 | |||||||||
00031670 | |||||||||
00031671 | |||||||||
00031672 | |||||||||
00031673 | |||||||||
00031674 | |||||||||
Contained_in_operon | CEOP2448 | ||||||||
Ortholog (46) | |||||||||
Paralog | WBGene00020858 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00019827 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description (2) | |||||||||
Disease_info | Potential_model | DOID:1793 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20292) | ||||
DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20292) | ||||||
Molecular_info | Corresponding_CDS | Y53C12A.4 | |||||||
Corresponding_transcript | Y53C12A.4.1 | ||||||||
Other_sequence (17) | |||||||||
Associated_feature | WBsf650452 | ||||||||
WBsf223691 | |||||||||
WBsf223692 | |||||||||
WBsf223693 | |||||||||
Experimental_info | RNAi_result (11) | ||||||||
Expr_pattern | Expr4804 | ||||||||
Expr1012408 | |||||||||
Expr1035832 | |||||||||
Expr1160688 | |||||||||
Expr2013662 | |||||||||
Expr2031896 | |||||||||
Drives_construct | WBCnstr00029748 | ||||||||
Construct_product | WBCnstr00001414 | ||||||||
WBCnstr00029748 | |||||||||
Microarray_results | SMD_Y53C12A.4 | ||||||||
175420_at | |||||||||
190866_at | |||||||||
A_12_P108106 | |||||||||
Aff_Y53C12A.4 | |||||||||
GPL13394_WBGene00013140 | |||||||||
GPL13914_Y53C12A.4 | |||||||||
GPL14144_Y53C12A.4_200-259_0.891_8_A | |||||||||
GPL14144_Y53C12A.4_788-847_0.932_1_B | |||||||||
GPL14144_Y53C12A.4_863-922_0.918_3_C | |||||||||
GPL19516_CGZ0048840 | |||||||||
GPL19516_CGZ0048841 | |||||||||
GPL21109_Y53C12A.4.1 | |||||||||
GPL3518_CE14890 | |||||||||
GPL8304_CE_WBGene00013140_A | |||||||||
GPL8673_Y53C12A_4P00030 | |||||||||
GPL8673_Y53C12A_4P00407 | |||||||||
GPL8673_Y53C12A_4P00649 | |||||||||
GPL9450_Y53C12A.4 | |||||||||
cea2.p.51420 | |||||||||
Expression_cluster (80) | |||||||||
Interaction (22) | |||||||||
Map_info | Map | II | Position | 1.65744 | Error | 0.002286 | |||
Positive | Positive_clone | Y53C12A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00028381 | ||||||||
WBPaper00030897 | |||||||||
WBPaper00034036 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00038846 | |||||||||
WBPaper00041303 | |||||||||
WBPaper00041850 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00055221 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |