WormBase Tree Display for Gene: WBGene00012643
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| WBGene00012643 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y39A1A.3 | |||||||
| Molecular_name | Y39A1A.3 | ||||||||
| Y39A1A.3.1 | |||||||||
| CE45493 | |||||||||
| Other_name | CELE_Y39A1A.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | Y39A1A.3 | ||||||||
| DB_info | Database | AceView | gene | 3L682 | |||||
| WormQTL | gene | WBGene00012643 | |||||||
| WormFlux | gene | WBGene00012643 | |||||||
| NDB | locus_tag | CELE_Y39A1A.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012643|UniProtKB=G5EEN7 | |||||||
| family | PTHR16537 | ||||||||
| NCBI | gene | 176479 | |||||||
| RefSeq | protein | NM_066933.4 | |||||||
| TREEFAM | TREEFAM_ID | TF320182 | |||||||
| TrEMBL | UniProtAcc | G5EEN7 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEN7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00016699 | ||||||||
| 00016700 | |||||||||
| Contained_in_operon | CEOP3684 | ||||||||
| Ortholog (22) | |||||||||
| Structured_description | Automated_description | Enriched in AFD; NSM; germ line; intestine; and neurons based on RNA-seq and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on tiling array; proteomic; RNA-seq; and microarray studies. Is affected by six chemicals including rotenone; Rifampin; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Sjoegren syndrome/scleroderma autoantigen 1 and Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). Is an ortholog of human ZNRD2 (zinc ribbon domain containing 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39A1A.3 | |||||||
| Corresponding_CDS_history | Y39A1A.3:wp220 | ||||||||
| Corresponding_transcript | Y39A1A.3.1 | ||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf227476 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00056114 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022479 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000396 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062428 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033436 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006740 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013566 | ||||||||
| Expr1035584 | |||||||||
| Expr1159631 | |||||||||
| Expr2007348 | |||||||||
| Expr2025583 | |||||||||
| Microarray_results | SMD_Y39A1A.3 | ||||||||
| 181514_s_at | |||||||||
| A_12_P103995 | |||||||||
| Aff_Y39A1A.3 | |||||||||
| GPL13394_WBGene00012643 | |||||||||
| GPL13914_Y39A1A.3 | |||||||||
| GPL14144_Y39A1A.3_182-241_0.769_44_C | |||||||||
| GPL14144_Y39A1A.3_472-531_0.927_4_A | |||||||||
| GPL14144_Y39A1A.3_53-112_0.813_31_B | |||||||||
| GPL19516_CGZ0044749 | |||||||||
| GPL21109_Y39A1A.3 | |||||||||
| GPL3518_CE19121 | |||||||||
| GPL8304_CE_WBGene00012643_A | |||||||||
| GPL8304_CE_WBGene00012643_C | |||||||||
| GPL8673_Y39A1A_3P00097 | |||||||||
| GPL8673_Y39A1A_3P00146 | |||||||||
| GPL8673_Y39A1A_3P00400 | |||||||||
| GPL9450_Y39A1A.3 | |||||||||
| cea2.c.23744 | |||||||||
| Expression_cluster (80) | |||||||||
| Interaction (23) | |||||||||
| Map_info (2) | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
