WormBase Tree Display for Gene: WBGene00012117
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WBGene00012117 | SMap | S_parent | Sequence | CHROMOSOME_V | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Allele (304) | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog (24) | ||||||
Structured_description | Concise_description | T28B11.1 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp1 or with other proteins; about 5% to 15% of T28B11.1 transcripts are RNA edited to change A to G resulting in a change to residue 369 from an K to a E. | Paper_evidence | WBPaper00012854 | ||
WBPaper00045975 | ||||||
Curator_confirmed (3) | ||||||
Date_last_updated | 29 Dec 2014 00:00:00 | |||||
Automated_description | Enriched in coelomocyte; germ line; mc3; neurons; and ventral nerve cord based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by fifteen chemicals including Cry5B; Zidovudine; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; F-box-like domain superfamily; and Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed (2) | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | T28B11.1a | ||||
T28B11.1b | ||||||
Corresponding_transcript | T28B11.1a.1 | |||||
T28B11.1a.2 | ||||||
T28B11.1b.1 | ||||||
Other_sequence | CRC10724_1 | |||||
CRC12102_1 | ||||||
MC04254 | ||||||
CSC02370_1 | ||||||
CR07406 | ||||||
MC00389 | ||||||
CRC00865_1 | ||||||
CBC07350_1 | ||||||
CR01510 | ||||||
FD516868.1 | ||||||
Associated_feature (30) | ||||||
Experimental_info | RNAi_result | WBRNAi00019378 | Inferred_automatically | RNAi_primary | ||
WBRNAi00054377 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1016789 | |||||
Expr1035354 | ||||||
Expr1157925 | ||||||
Expr2006596 | ||||||
Expr2024813 | ||||||
Microarray_results | SMD_T28B11.1 | |||||
174630_at | ||||||
182269_at | ||||||
A_12_P101936 | ||||||
A_12_P134075 | ||||||
Aff_T28B11.1 | ||||||
GPL13394_WBGene00012117 | ||||||
GPL13914_T28B11.1 | ||||||
GPL14144_T28B11.1_1069-1128_0.890_16_A | ||||||
GPL14144_T28B11.1_1303-1362_0.932_5_C | ||||||
GPL14144_T28B11.1_774-833_0.855_46_B | ||||||
GPL19516_CGZ0037388 | ||||||
GPL19516_CGZ0037389 | ||||||
GPL19516_CGZ0037390 | ||||||
GPL19516_CGZ0037391 | ||||||
GPL21109_T28B11.1a.1 | ||||||
GPL21109_T28B11.1b.1 | ||||||
GPL3518_CE14335 | ||||||
GPL8304_CE_WBGene00012117_A | ||||||
GPL8673_T28B11_1P00222 | ||||||
GPL8673_T28B11_1P00648 | ||||||
GPL8673_T28B11_1P01273 | ||||||
GPL9450_T28B11.1 | ||||||
cea2.c.38877 | ||||||
Expression_cluster (190) | ||||||
Interaction | WBInteraction000238924 | |||||
WBInteraction000246544 | ||||||
WBInteraction000340564 | ||||||
WBInteraction000393246 | ||||||
WBInteraction000461689 | ||||||
WBInteraction000570159 | ||||||
Map_info | Positive | Positive_clone | T28B11 | Inferred_automatically | From sequence, transcript, pseudogene data | |
Interpolated_map_position | V | 2.74512 | ||||
Reference | WBPaper00012854 | |||||
Method | Gene |