WormBase Tree Display for Gene: WBGene00009793
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| WBGene00009793 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pkn-1 | Person_evidence | WBPerson56 | |||||
| WBPerson505 | |||||||||
| Sequence_name | F46F6.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_F46F6.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | pkn-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Feb 2010 11:41:45 | WBPerson2970 | Name_change | CGC_name | pkn-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pkn | ||||||||
| Allele (71) | |||||||||
| Strain | WBStrain00002832 | ||||||||
| WBStrain00036580 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (43) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Automated_description | Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction. Located in M band and striated muscle dense body. Expressed in neurons and pharyngeal muscle cell. Is an ortholog of human PKN3 (protein kinase N3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F46F6.2a | |||||||
| F46F6.2b | |||||||||
| F46F6.2c | |||||||||
| F46F6.2d | |||||||||
| Corresponding_CDS_history | F46F6.2:wp83 | ||||||||
| F46F6.2b:wp271 | |||||||||
| Corresponding_transcript | F46F6.2a.1 | ||||||||
| F46F6.2b.1 | |||||||||
| F46F6.2c.1 | |||||||||
| F46F6.2d.1 | |||||||||
| Other_sequence (35) | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047564 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00109716 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001225 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032385 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015119 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021734 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109763 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076440 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109669 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109810 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1838 | ||||||||
| Expr6091 | |||||||||
| Expr9387 | |||||||||
| Expr11211 | |||||||||
| Expr11212 | |||||||||
| Expr1015556 | |||||||||
| Expr1034280 | |||||||||
| Expr1151402 | |||||||||
| Expr2014949 | |||||||||
| Expr2033184 | |||||||||
| Drives_construct (3) | |||||||||
| Construct_product | WBCnstr00013952 | ||||||||
| WBCnstr00018223 | |||||||||
| WBCnstr00031916 | |||||||||
| Microarray_results | SMD_F46F6.2 | ||||||||
| SMD_ZC504.5 | |||||||||
| 174725_at | |||||||||
| 192159_at | |||||||||
| A_12_P111453 | |||||||||
| Aff_F46F6.2 | |||||||||
| GPL13394_WBGene00009793 | |||||||||
| GPL13914_F46F6.2 | |||||||||
| GPL14144_F46F6.2b_2879-2938_0.905_8_C | |||||||||
| GPL14144_F46F6.2b_3206-3265_0.938_1_A | |||||||||
| GPL14144_F46F6.2b_3305-3364_0.928_4_B | |||||||||
| GPL19516_CGZ0022203 | |||||||||
| GPL19516_CGZ0022204 | |||||||||
| GPL21109_F46F6.2a | |||||||||
| GPL3518_CE31703 | |||||||||
| GPL8304_CE_WBGene00009793_A | |||||||||
| GPL8304_CE_WBGene00009793_B | |||||||||
| GPL8673_F46F6_2P01954 | |||||||||
| GPL8673_F46F6_2P02720 | |||||||||
| GPL8673_F46F6_2P02957 | |||||||||
| GPL9450_F46F6.2 | |||||||||
| cea2.p.144980 | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction (59) | |||||||||
| Map_info | Map | X | Position | 2.17965 | Error | 0.004397 | |||
| Positive | Positive_clone | F46F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027258 | ||||||||
| WBPaper00038084 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038843 | |||||||||
| WBPaper00040494 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057543 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
