WormBase Tree Display for Gene: WBGene00009078
expand all nodes | collapse all nodes | view schema
WBGene00009078 | SMap | S_parent | Sequence | F23B2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | rpb-12 | Person_evidence | WBPerson1787 | |||||
Sequence_name | F23B2.13 | ||||||||
Molecular_name | F23B2.13a | ||||||||
F23B2.13a.1 | |||||||||
CE20710 | |||||||||
F23B2.13b | |||||||||
CE49689 | |||||||||
F23B2.13b.1 | |||||||||
Other_name | rpc-10 | Person_evidence | WBPerson1787 | ||||||
CELE_F23B2.13 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | rpb-12 | ||||||||
DB_info | Database | AceView | gene | 4J910 | |||||
WormQTL | gene | WBGene00009078 | |||||||
WormFlux | gene | WBGene00009078 | |||||||
NDB | locus_tag | CELE_F23B2.13 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009078|UniProtKB=Q9U3I0 | |||||||
family | PTHR12056 | ||||||||
NCBI | gene | 184886 | |||||||
RefSeq | protein | NM_001392364.1 | |||||||
NM_069192.2 | |||||||||
TrEMBL | UniProtAcc | X5M5N4 | |||||||
Q9U3I0 | |||||||||
UniProt_GCRP | UniProtAcc | Q9U3I0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 08 Oct 2007 14:18:28 | WBPerson2970 | Name_change | CGC_name | rpb-12 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rpb | ||||||||
Allele (16) | |||||||||
Strain | WBStrain00049346 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (16) | |||||||||
Ortholog | WBGene00040472 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WBGene00063906 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
SGD:S000001185 | Saccharomyces cerevisiae | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
FB:FBgn0262954 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
ZFIN:ZDB-GENE-070820-18 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
SonicParanoid | |||||||||
HGNC:9198 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
MGI:102725 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
RGD:2319895 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
Structured_description | Automated_description | Predicted to enable DNA binding activity; DNA-directed 5'-3' RNA polymerase activity; and zinc ion binding activity. Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase I; transcription by RNA polymerase II; and transcription by RNA polymerase III. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Is an ortholog of human POLR2K (RNA polymerase II, I and III subunit K). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F23B2.13a | |||||||
F23B2.13b | |||||||||
Corresponding_transcript | F23B2.13a.1 | ||||||||
F23B2.13b.1 | |||||||||
Other_sequence (303) | |||||||||
Associated_feature (3) | |||||||||
Experimental_info | RNAi_result (20) | ||||||||
Expr_pattern | Expr1013932 | ||||||||
Expr1033954 | |||||||||
Expr1149312 | |||||||||
Expr2015421 | |||||||||
Expr2033656 | |||||||||
Drives_construct | WBCnstr00032482 | ||||||||
Construct_product | WBCnstr00032482 | ||||||||
Microarray_results | SMD_F23B2.13 | ||||||||
172963_x_at | |||||||||
A_12_P100913 | |||||||||
GPL13394_WBGene00009078 | |||||||||
GPL13914_F23B2.13 | |||||||||
GPL14144_F23B2.13_14-73_0.945_1_A | |||||||||
GPL14144_F23B2.13_6-65_0.942_2_C | |||||||||
GPL14144_F23B2.13_81-140_0.899_5_B | |||||||||
GPL19516_CGZ0017673 | |||||||||
GPL21109_F23B2.13 | |||||||||
GPL3518_CE20710 | |||||||||
GPL8304_CE_WBGene00009078_A | |||||||||
GPL8673_F23B2_13P00001 | |||||||||
GPL8673_F23B2_13P00033 | |||||||||
GPL8673_F23B2_13P00093 | |||||||||
GPL9450_F23B2.13 | |||||||||
cea2.i.25529 | |||||||||
Expression_cluster (115) | |||||||||
Interaction (159) | |||||||||
Map_info | Map | IV | Position | 4.06918 | Error | 0.005755 | |||
Positive | Positive_clone | F23B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00029038 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00059527 | |||||||||
WBPaper00065275 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |