WormBase Tree Display for Gene: WBGene00006727
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WBGene00006727 | SMap | S_parent | Sequence | F25B5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | ubq-1 | Person_evidence | WBPerson89 | |||||
Sequence_name | F25B5.4 | ||||||||
Molecular_name | F25B5.4 | ||||||||
F25B5.4.1 | |||||||||
CE01921 | |||||||||
F25B5.4.2 | |||||||||
Other_name | CELE_F25B5.4 | Accession_evidence | NDB | BX284603 | |||||
Public_name | ubq-1 | ||||||||
DB_info | Database | AceView | gene | 3H33 | |||||
WormQTL | gene | WBGene00006727 | |||||||
WormFlux | gene | WBGene00006727 | |||||||
NDB | locus_tag | CELE_F25B5.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006727|UniProtKB=P0CG71 | |||||||
family | PTHR10666 | ||||||||
NCBI | gene | 175840 | |||||||
RefSeq | protein | NM_171139.8 | |||||||
SwissProt | UniProtAcc | P0CG71 | |||||||
UniProt_GCRP | UniProtAcc | P0CG71 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ubq | ||||||||
Allele (75) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes polyubiquitin.ubq-1:lacZ expressed in all cells of embryo, L1; later mainly in muscle cells. [Graham et al. 1989; Stringham et al. 1992; PC] | ||||||||
Strain | WBStrain00002337 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00038987 | ||||||||
00038988 | |||||||||
00038989 | |||||||||
00038990 | |||||||||
00038991 | |||||||||
00038992 | |||||||||
00038993 | |||||||||
00038994 | |||||||||
00038995 | |||||||||
00038996 | |||||||||
Ortholog (29) | |||||||||
Paralog | WBGene00003587 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00006725 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00018660 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00018659 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00018661 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00006728 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable protein tag activity and ubiquitin protein ligase binding activity. Involved in programmed cell death involved in cell development and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Expressed in body wall musculature. Is an ortholog of human UBC (ubiquitin C). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F25B5.4 | |||||||
Corresponding_CDS_history | F25B5.4b:wp86 | ||||||||
F25B5.4c:wp86 | |||||||||
F25B5.4c:wp275 | |||||||||
Corresponding_transcript | F25B5.4.1 | ||||||||
F25B5.4.2 | |||||||||
Other_sequence (713) | |||||||||
Associated_feature (17) | |||||||||
Experimental_info | RNAi_result (16) | ||||||||
Expr_pattern | Chronogram1123 | ||||||||
Expr727 | |||||||||
Expr1383 | |||||||||
Expr1517 | |||||||||
Expr1014285 | |||||||||
Expr1032803 | |||||||||
Expr1149395 | |||||||||
Expr2017724 | |||||||||
Expr2035862 | |||||||||
Drives_construct | WBCnstr00003006 | ||||||||
WBCnstr00012507 | |||||||||
WBCnstr00022715 | |||||||||
WBCnstr00034191 | |||||||||
Construct_product | WBCnstr00012507 | ||||||||
WBCnstr00034191 | |||||||||
Microarray_results | SMD_F25B5.4 | ||||||||
SMD_F25B5.4:2 | |||||||||
174373_s_at | |||||||||
188498_s_at | |||||||||
AFFX-Ce_Ubiquitin_3_at | |||||||||
AFFX-Ce_Ubiquitin_5_at | |||||||||
AFFX-Ce_Ubiquitin_M_at | |||||||||
A_12_P102170 | |||||||||
Aff_F25B5.4 | |||||||||
GPL14144_F25B5.4a_1521-1580_0.892_25_A | |||||||||
GPL14144_F25B5.4a_2325-2384_0.948_3_B | |||||||||
GPL14144_F25B5.4a_2379-2438_0.954_2_C | |||||||||
GPL19516_CGZ0017837 | |||||||||
GPL19516_CGZ0017838 | |||||||||
GPL19516_CGZ0017839 | |||||||||
GPL19516_CGZ0017840 | |||||||||
GPL21109_F25B5.4a.1 | |||||||||
GPL3518_CE31915 | |||||||||
GPL8304_CE_WBGene00006727_A | |||||||||
GPL8304_CE_WBGene00006727_B | |||||||||
GPL8673_F25B5_4aP01514 | |||||||||
GPL8673_F25B5_4aP01873 | |||||||||
GPL8673_F25B5_4aP02408 | |||||||||
GPL8673_F25B5_4cP00374 | |||||||||
GPL8673_F25B5_4cP00926 | |||||||||
GPL8673_F25B5_4cP01497 | |||||||||
GPL9450_F25B5.4c | |||||||||
cea2.3.11613 | |||||||||
cea2.d.21925 | |||||||||
cea2.d.21928 | |||||||||
cea2.d.21933 | |||||||||
Expression_cluster (150) | |||||||||
Interaction (1696) | |||||||||
Map_info (3) | |||||||||
Reference (23) | |||||||||
Remark | No .b isoform present. [krb 030423] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |