WormBase Tree Display for Gene: WBGene00004979
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WBGene00004979 | SMap | S_parent | Sequence | F42G8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | sph-1 | Person_evidence | WBPerson451 | |||||
Sequence_name | F42G8.11 | ||||||||
Molecular_name | F42G8.11 | ||||||||
F42G8.11.1 | |||||||||
CE40059 | |||||||||
Other_name | CELE_F42G8.11 | Accession_evidence | NDB | BX284604 | |||||
Public_name | sph-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sph | ||||||||
Allele (23) | |||||||||
Strain | WBStrain00031923 | ||||||||
WBStrain00036200 | |||||||||
WBStrain00003813 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00032640 | ||||||||
00032641 | |||||||||
00032642 | |||||||||
00032643 | |||||||||
00032644 | |||||||||
00113388 | |||||||||
00113389 | |||||||||
Ortholog (43) | |||||||||
Structured_description | Concise_description | sph-1 encodes a member of the synaptophysin/synaptoporin family that contains a MARVEL domain, a membrane-associating domain found in lipid-associating proteins, and contains a transmembrane domain. | Curator_confirmed | WBPerson48 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Located in cytoplasmic vesicle. Expressed in anal sphincter muscle and pharyngeal muscle cell. Human ortholog(s) of this gene implicated in Alzheimer's disease and non-syndromic X-linked intellectual disability 96. Is an ortholog of human SYNPR (synaptoporin) and SYPL1 (synaptophysin like 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11506) | ||||
DOID:0112035 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11506) | ||||||
Molecular_info | Corresponding_CDS | F42G8.11 | |||||||
Corresponding_CDS_history | F42G8.11:wp156 | ||||||||
Corresponding_transcript | F42G8.11.1 | ||||||||
Other_sequence (24) | |||||||||
Associated_feature | WBsf651983 | ||||||||
WBsf651984 | |||||||||
WBsf668084 | |||||||||
WBsf230386 | |||||||||
Experimental_info | RNAi_result (3) | ||||||||
Expr_pattern | Expr3982 | ||||||||
Expr1020981 | |||||||||
Expr1032477 | |||||||||
Expr1150991 | |||||||||
Expr2016054 | |||||||||
Expr2034289 | |||||||||
Drives_construct | WBCnstr00011795 | ||||||||
WBCnstr00035295 | |||||||||
Construct_product | WBCnstr00035295 | ||||||||
Microarray_results | SMD_F42G8.11 | ||||||||
192403_s_at | |||||||||
A_12_P116379 | |||||||||
Aff_F42G8.11 | |||||||||
GPL13394_WBGene00004979 | |||||||||
GPL13914_F42G8.11 | |||||||||
GPL14144_F42G8.11_206-265_0.906_3_C | |||||||||
GPL14144_F42G8.11_310-369_0.909_2_B | |||||||||
GPL14144_F42G8.11_484-543_0.923_1_A | |||||||||
GPL19516_CGZ0021315 | |||||||||
GPL21109_F42G8.11 | |||||||||
GPL3518_CE17070 | |||||||||
GPL8304_CE_WBGene00004979_A | |||||||||
GPL8673_F42G8_11P00075 | |||||||||
GPL8673_F42G8_11P00203 | |||||||||
GPL8673_F42G8_11P00477 | |||||||||
GPL9450_F42G8.11 | |||||||||
cea2.i.26116 | |||||||||
Expression_cluster (114) | |||||||||
Interaction | WBInteraction000120132 | ||||||||
WBInteraction000122897 | |||||||||
WBInteraction000122898 | |||||||||
WBInteraction000134602 | |||||||||
WBInteraction000166894 | |||||||||
WBInteraction000180665 | |||||||||
WBInteraction000193904 | |||||||||
WBInteraction000428878 | |||||||||
WBInteraction000444399 | |||||||||
Map_info | Map | IV | Position | 3.61293 | Error | 0.001689 | |||
Positive | Positive_clone | F42G8 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4986 | |||||||
4448 | |||||||||
5613 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027627 | ||||||||
WBPaper00028886 | |||||||||
WBPaper00031849 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |