WormBase Tree Display for Gene: WBGene00004225
expand all nodes | collapse all nodes | view schema
| WBGene00004225 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F56C11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ptr-11 | Person_evidence | WBPerson349 | |||||
| Sequence_name | F56C11.2 | ||||||||
| Molecular_name | F56C11.2a | ||||||||
| F56C11.2a.1 | |||||||||
| CE17902 | |||||||||
| F56C11.2b | |||||||||
| CE49167 | |||||||||
| F56C11.2a.2 | |||||||||
| F56C11.2b.1 | |||||||||
| Other_name | CELE_F56C11.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ptr-11 | ||||||||
| DB_info | Database | AceView | gene | 1A634 | |||||
| WormQTL | gene | WBGene00004225 | |||||||
| WormFlux | gene | WBGene00004225 | |||||||
| NDB | locus_tag | CELE_F56C11.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004225|UniProtKB=O44978 | |||||||
| family | PTHR10796 | ||||||||
| NCBI | gene | 171609 | |||||||
| RefSeq | protein | NM_058286.8 | |||||||
| NM_001306284.3 | |||||||||
| TrEMBL | UniProtAcc | V6CLI4 | |||||||
| O44978 | |||||||||
| UniProt_GCRP | UniProtAcc | O44978 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptr | ||||||||
| Allele (153) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033706 | ||||||||
| 00033707 | |||||||||
| 00033708 | |||||||||
| 00033709 | |||||||||
| 00033710 | |||||||||
| 00033711 | |||||||||
| 00112515 | |||||||||
| Ortholog (34) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | ptr-11 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-11is required for normal growth to full size, locomotion, and vulvalmorphogenesis. | Paper_evidence | WBPaper00024393 | |||||
| WBPaper00026841 | |||||||||
| WBPaper00027263 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 08 Nov 2006 00:00:00 | ||||||||
| Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56C11.2a | |||||||
| F56C11.2b | |||||||||
| Corresponding_transcript | F56C11.2a.1 | ||||||||
| F56C11.2a.2 | |||||||||
| F56C11.2b.1 | |||||||||
| Other_sequence (49) | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076951 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00075794 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032935 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048650 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076919 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003809 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021242 | ||||||||
| Expr1032079 | |||||||||
| Expr1152412 | |||||||||
| Expr2015154 | |||||||||
| Expr2033392 | |||||||||
| Drives_construct | WBCnstr00035624 | ||||||||
| Construct_product | WBCnstr00035624 | ||||||||
| Microarray_results | SMD_F56C11.2 | ||||||||
| 171745_x_at | |||||||||
| 188390_at | |||||||||
| A_12_P116240 | |||||||||
| Aff_F56C11.2 | |||||||||
| GPL13394_WBGene00004225 | |||||||||
| GPL13914_F56C11.2 | |||||||||
| GPL14144_F56C11.2_1399-1458_0.873_18_A | |||||||||
| GPL14144_F56C11.2_1465-1524_0.849_33_C | |||||||||
| GPL14144_F56C11.2_1648-1707_0.875_16_B | |||||||||
| GPL19516_CGZ0024533 | |||||||||
| GPL21109_F56C11.2 | |||||||||
| GPL3518_CE17902 | |||||||||
| GPL8304_CE_WBGene00004225_A | |||||||||
| GPL8673_F56C11_2P01074 | |||||||||
| GPL8673_F56C11_2P01279 | |||||||||
| GPL8673_F56C11_2P02308 | |||||||||
| GPL9450_F56C11.2 | |||||||||
| cea2.p.12497 | |||||||||
| Expression_cluster (219) | |||||||||
| Interaction | WBInteraction000300955 | ||||||||
| WBInteraction000448747 | |||||||||
| WBInteraction000466592 | |||||||||
| WBInteraction000468493 | |||||||||
| WBInteraction000551576 | |||||||||
| Map_info | Map | I | Position | -19.1415 | Error | 0.002875 | |||
| Positive | Positive_clone | F56C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (8) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
