WormBase Tree Display for Gene: WBGene00004222
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WBGene00004222 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F44F4 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ptr | ||||||
Allele (61) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00068055 | ||||||
00068056 | |||||||
00068057 | |||||||
00068058 | |||||||
00068059 | |||||||
00068060 | |||||||
00112512 | |||||||
Ortholog (27) | |||||||
Paralog (30) | |||||||
Structured_description | Concise_description | ptr-8 encodes a nematode-specific member of the sterol sensing domain(SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) andhuman PTCH (OMIM:601309, mutated in basal cell nevus syndrome); PTR-8 isweakly required for normal molting from L4 to adult stages; PTR-8 isalso required for normal growth to full size and locomotion; PTR-8 isexpressed in hypodermis. | Paper_evidence | WBPaper00004265 | |||
WBPaper00026596 | |||||||
WBPaper00026841 | |||||||
WBPaper00027263 | |||||||
Curator_confirmed | WBPerson48 | ||||||
WBPerson567 | |||||||
Date_last_updated | 08 Nov 2006 00:00:00 | ||||||
Automated_description | Involved in molting cycle. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Expressed in hypodermis and rectum. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F44F4.4 | |||||
Corresponding_transcript | F44F4.4.1 | ||||||
Other_sequence | Name_isotig02160 | ||||||
Dviv_isotig21035 | |||||||
Dviv_isotig21036 | |||||||
Acan_isotig07632 | |||||||
Oden_isotig19722 | |||||||
Dviv_isotig20408 | |||||||
Associated_feature | WBsf989520 | ||||||
WBsf222082 | |||||||
Experimental_info | RNAi_result (7) | ||||||
Expr_pattern | Expr2067 | ||||||
Expr1017982 | |||||||
Expr1151174 | |||||||
Expr2015174 | |||||||
Expr2033412 | |||||||
Drives_construct | WBCnstr00035627 | ||||||
Construct_product | WBCnstr00035627 | ||||||
Microarray_results | SMD_F44F4.4 | ||||||
187935_s_at | |||||||
A_12_P101115 | |||||||
Aff_F44F4.4 | |||||||
GPL13394_WBGene00004222 | |||||||
GPL13914_F44F4.4 | |||||||
GPL14144_F44F4.4_2618-2677_0.971_1_A | |||||||
GPL19516_CGZ0021723 | |||||||
GPL21109_F44F4.4 | |||||||
GPL3518_CE01000 | |||||||
GPL8304_CE_WBGene00004222_A | |||||||
GPL8304_CE_WBGene00004222_B | |||||||
GPL8673_F44F4_4P01455 | |||||||
GPL8673_F44F4_4P01878 | |||||||
GPL8673_F44F4_4P02244 | |||||||
GPL9450_F44F4.4 | |||||||
cea2.p.39714 | |||||||
Expression_cluster (216) | |||||||
Interaction | WBInteraction000140439 | ||||||
WBInteraction000141398 | |||||||
WBInteraction000351878 | |||||||
WBInteraction000385069 | |||||||
WBInteraction000406657 | |||||||
WBInteraction000407281 | |||||||
WBInteraction000409575 | |||||||
WBInteraction000453122 | |||||||
WBInteraction000472506 | |||||||
Map_info | Map | II | Position | 3.13127 | Error | 9.3e-05 | |
Positive | Positive_clone | F44F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00004265 | ||||||
WBPaper00025183 | |||||||
WBPaper00026596 | |||||||
WBPaper00026841 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00062715 | |||||||
WBPaper00066265 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |