WormBase Tree Display for Gene: WBGene00004173
expand all nodes | collapse all nodes | view schema
| WBGene00004173 | SMap | S_parent | Sequence | ZC15 | |||
|---|---|---|---|---|---|---|---|
| Identity (6) | |||||||
| Gene_info | Biotype | SO:0001217 | |||||
| Gene_class | pqn | ||||||
| Allele (42) | |||||||
| RNASeq_FPKM (74) | |||||||
| Ortholog (19) | |||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||
| WBPaper00012788 | |||||||
| WBPaper00012830 | |||||||
| WBPaper00012882 | |||||||
| WBPaper00012897 | |||||||
| WBPaper00013003 | |||||||
| Curator_confirmed | WBPerson567 | ||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
| Automated_description | Enriched in pharyngeal muscle cell and pm7 based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by seventeen chemicals including rotenone; Tunicamycin; and D-glucose based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||
| Curator_confirmed | WBPerson324 | ||||||
| WBPerson37462 | |||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
| Molecular_info | Corresponding_CDS | ZC15.8 | |||||
| Corresponding_transcript | ZC15.8.1 | ||||||
| Other_sequence (5) | |||||||
| Associated_feature | WBsf653601 | ||||||
| WBsf1003500 | |||||||
| WBsf1003501 | |||||||
| WBsf1003502 | |||||||
| WBsf1021926 | |||||||
| WBsf1021927 | |||||||
| Experimental_info | RNAi_result | WBRNAi00058746 | Inferred_automatically | RNAi_primary | |||
| WBRNAi00021577 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037956 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1020768 | ||||||
| Expr1032035 | |||||||
| Expr1162167 | |||||||
| Expr2015083 | |||||||
| Expr2033319 | |||||||
| Drives_construct | WBCnstr00035656 | ||||||
| Construct_product | WBCnstr00035656 | ||||||
| Microarray_results | SMD_ZC15.8 | ||||||
| 177254_at | |||||||
| A_12_P107031 | |||||||
| Aff_ZC15.8 | |||||||
| GPL14144_ZC15.8_144-203_0.868_14_C | |||||||
| GPL14144_ZC15.8_179-238_0.968_1_A | |||||||
| GPL14144_ZC15.8_203-262_0.958_2_B | |||||||
| GPL19516_CGZ0055573 | |||||||
| GPL3518_CE16689 | |||||||
| GPL8304_CE_WBGene00004173_A | |||||||
| GPL8673_ZC15_8P00006 | |||||||
| GPL8673_ZC15_8P00187 | |||||||
| GPL8673_ZC15_8P00259 | |||||||
| GPL9450_ZC15.8 | |||||||
| cea2.c.40345 | |||||||
| Expression_cluster (210) | |||||||
| Interaction | WBInteraction000579172 | ||||||
| Map_info | Map | V | Position | 24.9816 | Error | 0.000505 | |
| Positive | Positive_clone | ZC15 | Inferred_automatically | From CDS info | |||
| From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||
| Reference | WBPaper00039614 | ||||||
| WBPaper00043777 | |||||||
| WBPaper00048136 | |||||||
| WBPaper00064648 | |||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
| Method | Gene |
