WormBase Tree Display for Gene: WBGene00003687
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WBGene00003687 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | nhr-97 | Person_evidence | WBPerson600 | |||||
Sequence_name | H27C11.1 | ||||||||
Molecular_name | H27C11.1a | ||||||||
H27C11.1a.1 | |||||||||
CE31027 | |||||||||
H27C11.1b | |||||||||
CE39262 | |||||||||
H27C11.1a.2 | |||||||||
H27C11.1b.1 | |||||||||
H27C11.1b.2 | |||||||||
Other_name | CELE_H27C11.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nhr-97 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00003687 | |||||
WormFlux | gene | WBGene00003687 | |||||||
NDB | locus_tag | CELE_H27C11.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003687|UniProtKB=Q9BJK5 | |||||||
family | PTHR47519 | ||||||||
NCBI | gene | 177810 | |||||||
RefSeq | protein | NM_001392373.1 | |||||||
NM_001047489.5 | |||||||||
SwissProt | UniProtAcc | Q9BJK5 | |||||||
TREEFAM | TREEFAM_ID | TF315278 | |||||||
UniProt_GCRP | UniProtAcc | Q9BJK5 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (68) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00091534 | ||||||||
00091535 | |||||||||
00091536 | |||||||||
00091537 | |||||||||
00111545 | |||||||||
00111546 | |||||||||
00111547 | |||||||||
00111548 | |||||||||
Ortholog (29) | |||||||||
Paralog (15) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | H27C11.1a | |||||||
H27C11.1b | |||||||||
Corresponding_CDS_history | H27C11.1:wp80 | ||||||||
Corresponding_transcript | H27C11.1a.1 | ||||||||
H27C11.1a.2 | |||||||||
H27C11.1b.1 | |||||||||
H27C11.1b.2 | |||||||||
Other_sequence | HG10379 | ||||||||
CBC13154_1 | |||||||||
CGC00782_1 | |||||||||
BUC00409_1 | |||||||||
BXC03820_1 | |||||||||
HGC09044_1 | |||||||||
CR05992 | |||||||||
CGC00625_1 | |||||||||
CRC01413_1 | |||||||||
Associated_feature | WBsf655047 | ||||||||
WBsf660521 | |||||||||
WBsf716787 | |||||||||
WBsf978783 | |||||||||
WBsf997472 | |||||||||
WBsf1017997 | |||||||||
Transcription_factor | WBTranscriptionFactor000458 | ||||||||
Experimental_info | RNAi_result | WBRNAi00049500 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00115819 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00016325 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092861 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00033757 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1024195 | ||||||||
Expr1031715 | |||||||||
Expr1153222 | |||||||||
Expr2014249 | |||||||||
Expr2032490 | |||||||||
Drives_construct | WBCnstr00035946 | ||||||||
Construct_product | WBCnstr00035946 | ||||||||
Microarray_results | SMD_H27C11.1 | ||||||||
175182_at | |||||||||
194122_at | |||||||||
A_12_P113925 | |||||||||
A_12_P148530 | |||||||||
A_12_P148531 | |||||||||
A_12_P148532 | |||||||||
A_12_P148533 | |||||||||
Aff_H27C11.1 | |||||||||
GPL13394_WBGene00003687 | |||||||||
GPL13914_H27C11.1 | |||||||||
GPL14144_H27C11.1a_1081-1140_0.926_10_B | |||||||||
GPL14144_H27C11.1a_1177-1236_0.956_3_A | |||||||||
GPL14144_H27C11.1a_923-982_0.920_13_C | |||||||||
GPL19516_CGZ0026753 | |||||||||
GPL19516_CGZ0026754 | |||||||||
GPL19516_CGZ0026755 | |||||||||
GPL19516_CGZ0026756 | |||||||||
GPL21109_H27C11.1a | |||||||||
GPL3518_CE31027 | |||||||||
GPL8304_CE_WBGene00003687_A | |||||||||
GPL8304_CE_WBGene00003687_B | |||||||||
GPL8673_H27C11_1aP00094 | |||||||||
GPL8673_H27C11_1aP00104 | |||||||||
GPL8673_H27C11_1aP00114 | |||||||||
GPL8673_H27C11_1bP00324 | |||||||||
GPL8673_H27C11_1bP00663 | |||||||||
GPL8673_H27C11_1bP00870 | |||||||||
GPL9450_H27C11.1 | |||||||||
cea2.c.29399 | |||||||||
Expression_cluster (139) | |||||||||
Interaction | WBInteraction000258961 | ||||||||
WBInteraction000543031 | |||||||||
Map_info | Map | IV | Position | 4.40086 | Error | 0.000949 | |||
Positive | Positive_clone | H27C11 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4175 | |||||||
Pseudo_map_position | |||||||||
Reference (2) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |