WormBase Tree Display for Gene: WBGene00003612
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WBGene00003612 | Evidence | Paper_evidence | WBPaper00003416 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y5H2B | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhr | ||||||
Allele (84) | |||||||
Legacy_information | NMK. Nuclear hormone receptor superfamily. [AE] | ||||||
[C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y50H8 etc. [AE] | |||||||
Strain | WBStrain00034507 | ||||||
WBStrain00034509 | |||||||
WBStrain00036771 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (12) | |||||||
Ortholog (26) | |||||||
Paralog (225) | |||||||
Structured_description | Concise_description | nhr-13 encodes a member of the nuclear hormone receptor family. | Curator_confirmed | WBPerson48 | |||
Date_last_updated | 16 Feb 2005 00:00:00 | ||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y5H2B.2a | |||||
Y5H2B.2b | |||||||
Corresponding_CDS_history | Y5H2B.2:wp126 | ||||||
Corresponding_transcript | Y5H2B.2a.1 | ||||||
Y5H2B.2b.1 | |||||||
Other_sequence | CRC03067_1 | ||||||
CRC10192_1 | |||||||
CBC15711_1 | |||||||
CR03762 | |||||||
CJC17452_1 | |||||||
CR04047 | |||||||
CBC12541_1 | |||||||
Associated_feature | WBsf646695 | ||||||
WBsf978803 | |||||||
WBsf1019267 | |||||||
WBsf1019268 | |||||||
WBsf231482 | |||||||
WBsf231483 | |||||||
WBsf231484 | |||||||
Transcription_factor | WBTranscriptionFactor000349 | ||||||
Experimental_info | RNAi_result | WBRNAi00057796 | Inferred_automatically | RNAi_primary | |||
WBRNAi00037649 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021190 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021194 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr7733 | ||||||
Expr1022731 | |||||||
Expr1031659 | |||||||
Expr1161228 | |||||||
Expr2014040 | |||||||
Expr2032280 | |||||||
Drives_construct | WBCnstr00012878 | ||||||
WBCnstr00036001 | |||||||
Construct_product | WBCnstr00036001 | ||||||
Microarray_results | SMD_Y5H2B.D | ||||||
SMD_Y5H2B.H | |||||||
176625_at | |||||||
A_12_P115984 | |||||||
GPL13394_WBGene00003612 | |||||||
GPL13914_Y5H2B.2 | |||||||
GPL14144_Y5H2B.2b_463-522_0.871_15_C | |||||||
GPL14144_Y5H2B.2b_581-640_0.894_8_B | |||||||
GPL14144_Y5H2B.2b_834-893_0.912_5_A | |||||||
GPL19516_CGZ0051413 | |||||||
GPL21109_Y5H2B.2a | |||||||
GPL3518_CE26221 | |||||||
GPL8304_CE_WBGene00003612_A | |||||||
GPL8673_Y5H2B_2aP00113 | |||||||
GPL8673_Y5H2B_2aP00788 | |||||||
GPL8673_Y5H2B_2aP01182 | |||||||
GPL8673_Y5H2B_2bP00113 | |||||||
GPL8673_Y5H2B_2bP00788 | |||||||
GPL8673_Y5H2B_2bP01132 | |||||||
GPL9450_Y5H2B.2 | |||||||
cea2.c.39466 | |||||||
Expression_cluster (76) | |||||||
Interaction (31) | |||||||
WBProcess | WBbiopr:00000121 | ||||||
Map_info | Map | V | Position | -15.5307 | Error | 0.009682 | |
Positive | Positive_clone | cm9g2 | |||||
Y5E4 | Person_evidence | WBPerson600 | |||||
Y5H2B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Y50H8 | Person_evidence | WBPerson600 | |||||
Y52H2 | Person_evidence | WBPerson600 | |||||
Y54G1 | Person_evidence | WBPerson600 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00027309 | ||||||
WBPaper00034500 | |||||||
WBPaper00040998 | |||||||
WBPaper00048196 | |||||||
WBPaper00061653 | |||||||
Picture | WBPicture0000013097 | ||||||
Remark | Map V Position -14.960000 | ||||||
cm9g2 matches genomic sequence Y5H2B.2, but nhr-18 is on this Yac as well. sdm 1/12/00 | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |