WormBase Tree Display for Gene: WBGene00003612
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WBGene00003612 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y5H2B | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | nhr-13 | Person_evidence | WBPerson600 | |||||
Sequence_name | Y5H2B.2 | ||||||||
Molecular_name | Y5H2B.2a | ||||||||
Y5H2B.2a.1 | |||||||||
CE26221 | |||||||||
Y5H2B.2b | |||||||||
CE36963 | |||||||||
Y5H2B.2b.1 | |||||||||
Other_name | Y5H2B.d | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y5H2B.h | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y5H2B.2 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | nhr-13 | ||||||||
DB_info | Database | AceView | gene | 5C673 | |||||
WormQTL | gene | WBGene00003612 | |||||||
WormFlux | gene | WBGene00003612 | |||||||
NDB | locus_tag | CELE_Y5H2B.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003612|UniProtKB=Q9N4Q7 | |||||||
family | PTHR46011 | ||||||||
NCBI | gene | 178696 | |||||||
RefSeq | protein | NM_001029098.6 | |||||||
NM_001029097.6 | |||||||||
SwissProt | UniProtAcc | Q9N4Q7 | |||||||
TREEFAM | TREEFAM_ID | TF321941 | |||||||
UniProt_GCRP | UniProtAcc | Q9N4Q7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (84) | |||||||||
Legacy_information | NMK. Nuclear hormone receptor superfamily. [AE] | ||||||||
[C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y50H8 etc. [AE] | |||||||||
Strain | WBStrain00034507 | ||||||||
WBStrain00034509 | |||||||||
WBStrain00036771 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (26) | |||||||||
Paralog (225) | |||||||||
Structured_description | Concise_description | nhr-13 encodes a member of the nuclear hormone receptor family. | Curator_confirmed | WBPerson48 | |||||
Date_last_updated | 16 Feb 2005 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y5H2B.2a | |||||||
Y5H2B.2b | |||||||||
Corresponding_CDS_history | Y5H2B.2:wp126 | ||||||||
Corresponding_transcript | Y5H2B.2a.1 | ||||||||
Y5H2B.2b.1 | |||||||||
Other_sequence | CRC03067_1 | ||||||||
CRC10192_1 | |||||||||
CBC15711_1 | |||||||||
CR03762 | |||||||||
CJC17452_1 | |||||||||
CR04047 | |||||||||
CBC12541_1 | |||||||||
Associated_feature | WBsf646695 | ||||||||
WBsf978803 | |||||||||
WBsf1019267 | |||||||||
WBsf1019268 | |||||||||
WBsf231482 | |||||||||
WBsf231483 | |||||||||
WBsf231484 | |||||||||
Transcription_factor | WBTranscriptionFactor000349 | ||||||||
Experimental_info | RNAi_result | WBRNAi00057796 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037649 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021190 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021194 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7733 | ||||||||
Expr1022731 | |||||||||
Expr1031659 | |||||||||
Expr1161228 | |||||||||
Expr2014040 | |||||||||
Expr2032280 | |||||||||
Drives_construct (2) | |||||||||
Construct_product | WBCnstr00036001 | ||||||||
Microarray_results | SMD_Y5H2B.D | ||||||||
SMD_Y5H2B.H | |||||||||
176625_at | |||||||||
A_12_P115984 | |||||||||
GPL13394_WBGene00003612 | |||||||||
GPL13914_Y5H2B.2 | |||||||||
GPL14144_Y5H2B.2b_463-522_0.871_15_C | |||||||||
GPL14144_Y5H2B.2b_581-640_0.894_8_B | |||||||||
GPL14144_Y5H2B.2b_834-893_0.912_5_A | |||||||||
GPL19516_CGZ0051413 | |||||||||
GPL21109_Y5H2B.2a | |||||||||
GPL3518_CE26221 | |||||||||
GPL8304_CE_WBGene00003612_A | |||||||||
GPL8673_Y5H2B_2aP00113 | |||||||||
GPL8673_Y5H2B_2aP00788 | |||||||||
GPL8673_Y5H2B_2aP01182 | |||||||||
GPL8673_Y5H2B_2bP00113 | |||||||||
GPL8673_Y5H2B_2bP00788 | |||||||||
GPL8673_Y5H2B_2bP01132 | |||||||||
GPL9450_Y5H2B.2 | |||||||||
cea2.c.39466 | |||||||||
Expression_cluster (76) | |||||||||
Interaction (31) | |||||||||
WBProcess | WBbiopr:00000121 | ||||||||
Map_info | Map | V | Position | -15.5307 | Error | 0.009682 | |||
Positive | Positive_clone | cm9g2 | |||||||
Y5E4 | Person_evidence | WBPerson600 | |||||||
Y5H2B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Y50H8 | Person_evidence | WBPerson600 | |||||||
Y52H2 | Person_evidence | WBPerson600 | |||||||
Y54G1 | Person_evidence | WBPerson600 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027309 | ||||||||
WBPaper00034500 | |||||||||
WBPaper00040998 | |||||||||
WBPaper00048196 | |||||||||
WBPaper00061653 | |||||||||
Picture | WBPicture0000013097 | ||||||||
Remark | Map V Position -14.960000 | ||||||||
cm9g2 matches genomic sequence Y5H2B.2, but nhr-18 is on this Yac as well. sdm 1/12/00 | |||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |