WormBase Tree Display for Gene: WBGene00003442
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WBGene00003442 | SMap | S_parent | Sequence | C34F11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | msp-49 | Person_evidence | WBPerson680 | |||||
Sequence_name | C34F11.6 | ||||||||
Molecular_name | C34F11.6 | ||||||||
C34F11.6.1 | |||||||||
CE04166 | |||||||||
Other_name | CELE_C34F11.6 | Accession_evidence | NDB | BX284602 | |||||
Public_name | msp-49 | ||||||||
DB_info | Database (9) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | msp | ||||||||
Allele | WBVar01499702 | ||||||||
WBVar01498435 | |||||||||
WBVar02124677 | |||||||||
WBVar00730600 | |||||||||
WBVar01305997 | |||||||||
WBVar02122540 | |||||||||
WBVar00365657 | |||||||||
WBVar00365658 | |||||||||
WBVar00365659 | |||||||||
WBVar00365660 | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes MSP (16kD); msp-45 cluster. [Ward et al. (1988); BA] | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00061295 | ||||||||
00061296 | |||||||||
00061297 | |||||||||
00061298 | |||||||||
00061299 | |||||||||
Ortholog (30) | |||||||||
Paralog (50) | |||||||||
Structured_description | Concise_description | msp-49 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. | Paper_evidence | WBPaper00001023 | |||||
WBPaper00002143 | |||||||||
WBPaper00004591 | |||||||||
WBPaper00005670 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
Automated_description | Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Expressed in gonad; oocyte; and sperm. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C34F11.6 | |||||||
Corresponding_transcript | C34F11.6.1 | ||||||||
Other_sequence (99) | |||||||||
Associated_feature | WBsf716984 | ||||||||
WBsf987814 | |||||||||
WBsf221241 | |||||||||
Experimental_info | RNAi_result | WBRNAi00029540 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00092860 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041913 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011619 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059507 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3417 | ||||||||
Expr1010178 | |||||||||
Expr1145920 | |||||||||
Expr2013778 | |||||||||
Expr2032017 | |||||||||
Drives_construct | WBCnstr00036116 | ||||||||
Construct_product | WBCnstr00036116 | ||||||||
Antibody | WBAntibody00000037 | ||||||||
WBAntibody00000038 | |||||||||
WBAntibody00000854 | |||||||||
WBAntibody00000855 | |||||||||
WBAntibody00000856 | |||||||||
WBAntibody00000857 | |||||||||
WBAntibody00000858 | |||||||||
Microarray_results | SMD_C34F11.6 | ||||||||
172885_x_at | |||||||||
172896_x_at | |||||||||
A_12_P120275 | |||||||||
Aff_C34F11.6 | |||||||||
GPL14144_C34F11.6_48-107_0.881_1_A | |||||||||
GPL19516_CGZ0007553 | |||||||||
GPL19516_CGZ0007555 | |||||||||
GPL21109_C34F11.4 | |||||||||
GPL21109_C34F11.6 | |||||||||
GPL3518_CE04166 | |||||||||
GPL8304_CE_WBGene00003442_A | |||||||||
GPL8673_C34F11_6P00168 | |||||||||
GPL8673_C34F11_6P00214 | |||||||||
GPL9450_C34F11.4 | |||||||||
GPL9450_C34F11.6 | |||||||||
cea2.d.15447 | |||||||||
cea2.d.15452 | |||||||||
Expression_cluster (259) | |||||||||
Interaction (196) | |||||||||
Map_info | Map | II | Position | -1.94205 | Error | 0.002852 | |||
Positive | Positive_clone | C34F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00001023 | ||||||||
WBPaper00024312 | |||||||||
WBPaper00040308 | |||||||||
WBPaper00041549 | |||||||||
WBPaper00057218 | |||||||||
WBPaper00064502 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |