WormBase Tree Display for Gene: WBGene00003172
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WBGene00003172 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | mec-8 | Person_evidence | WBPerson95 | |||||
Sequence_name | F46A9.6 | ||||||||
Molecular_name | F46A9.6 | ||||||||
F46A9.6.1 | |||||||||
CE08260 | |||||||||
F46A9.6.2 | |||||||||
Other_name | CELE_F46A9.6 | Accession_evidence | NDB | BX284601 | |||||
Public_name | mec-8 | ||||||||
DB_info | Database | AceView | gene | 1K18 | |||||
WormQTL | gene | WBGene00003172 | |||||||
WormFlux | gene | WBGene00003172 | |||||||
NDB | locus_tag | CELE_F46A9.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003172|UniProtKB=G5ECJ4 | |||||||
family | PTHR10501 | ||||||||
NCBI | gene | 172771 | |||||||
RefSeq | protein | NM_060107.7 | |||||||
TREEFAM | TREEFAM_ID | TF351070 | |||||||
TrEMBL | UniProtAcc | G5ECJ4 | |||||||
UniProt_GCRP | UniProtAcc | G5ECJ4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info (12) | |||||||||
Molecular_info | Corresponding_CDS | F46A9.6 | |||||||
Corresponding_transcript | F46A9.6.1 | ||||||||
F46A9.6.2 | |||||||||
Other_sequence (24) | |||||||||
Associated_feature (31) | |||||||||
Gene_product_binds | WBsf047657 | ||||||||
WBsf047658 | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern (12) | |||||||||
Drives_construct | WBCnstr00002454 | ||||||||
WBCnstr00006517 | |||||||||
WBCnstr00010759 | |||||||||
WBCnstr00036198 | |||||||||
WBCnstr00041290 | |||||||||
WBCnstr00042667 | |||||||||
Construct_product | WBCnstr00006517 | ||||||||
WBCnstr00010759 | |||||||||
WBCnstr00016049 | |||||||||
WBCnstr00036198 | |||||||||
WBCnstr00041290 | |||||||||
WBCnstr00042667 | |||||||||
Regulate_expr_cluster (4) | |||||||||
Antibody | WBAntibody00000576 | ||||||||
Microarray_results | SMD_C17E4.11 | ||||||||
SMD_F46A9.6 | |||||||||
174034_at | |||||||||
192507_at | |||||||||
A_12_P115623 | |||||||||
A_12_P156580 | |||||||||
A_12_P156581 | |||||||||
A_12_P156582 | |||||||||
A_12_P156583 | |||||||||
Aff_C17E4.11 | |||||||||
GPL13394_WBGene00003172 | |||||||||
GPL13914_F46A9.6 | |||||||||
GPL14144_F46A9.6_486-545_0.943_6_C | |||||||||
GPL14144_F46A9.6_703-762_0.952_3_B | |||||||||
GPL14144_F46A9.6_839-898_0.966_1_A | |||||||||
GPL19516_CGZ0021993 | |||||||||
GPL19516_CGZ0021994 | |||||||||
GPL21109_F46A9.6.1 | |||||||||
GPL3518_CE08260 | |||||||||
GPL8304_CE_WBGene00003172_A | |||||||||
GPL8304_CE_WBGene00003172_C | |||||||||
GPL8673_F46A9_6P00066 | |||||||||
GPL8673_F46A9_6P00506 | |||||||||
GPL8673_F46A9_6P00662 | |||||||||
GPL9450_F46A9.6 | |||||||||
cea2.c.03711 | |||||||||
Expression_cluster (163) | |||||||||
Interaction (185) | |||||||||
Map_info | Map | I | Position | 3.76436 | Error | 0.0003 | |||
Well_ordered | |||||||||
Positive | Positive_clone | C17E4 | |||||||
C34A2 | |||||||||
F46A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Mapping_data | 2_point | 27 | |||||||
5741 | |||||||||
Multi_point (14) | |||||||||
Pos_neg_data (18) | |||||||||
Reference (119) | |||||||||
Remark | [Lundquist EA] I'm quite certain that these polymorphisms are defects in the mec-8 gene. u456 and rh170 are small deletions of the same 2.5kb HIII fragment, u391 is a complex rearrangement that has a breakpoint in the same 2.5kb HIII fragment, and mn472 is a Tc1 insertion into the same 2.5kb HIII fragment. Furthermore, the area of these cosmids on the physical map is in good agreement with the genetic map position of mec-8. Rescue is hopefully on the way. | ||||||||
Method | Gene |